Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42190 201 / 3e-67 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT1G20140 201 / 5e-67 ASK4 SKP1-like 4 (.1) AT4G34210 199 / 2e-66 ASK11 SKP1-like 11 (.1) AT1G75950 198 / 3e-66 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT4G34470 197 / 1e-65 ASK12 SKP1-like 12 (.1) AT2G25700 197 / 1e-65 ASK3 SKP1-like 3 (.1) AT3G60010 181 / 3e-59 ASK13 SKP1-like 13 (.1) AT3G21860 175 / 6e-57 ASK10 SKP1-like 10 (.1) AT2G03170 174 / 2e-56 ASK14 SKP1-like 14 (.1) AT2G03160 175 / 3e-56 ASK19 SKP1-like 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019794 [exp] 210 / 1e-70 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10005610 [exp] 208 / 6e-70 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017282 [exp] 208 / 7e-70 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017281 [exp] 208 / 7e-70 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10013575 [exp] 204 / 3e-68 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10014115 [exp] 206 / 9e-64 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10019432 [exp] 182 / 8e-60 AT1G20140 186 / 2e-61 SKP1-like 4 (.1) Lus10002803 [exp] 149 / 1e-46 AT1G20140 189 / 3e-62 SKP1-like 4 (.1) Lus10031747 [exp] 102 / 5e-28 AT2G03190 104 / 7e-29 SKP1-like 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G243100 [exp] 218 / 7e-74 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.005G109900 [exp] 218 / 8e-74 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.002G018700 [exp] 216 / 2e-73 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.009G135800 [exp] 207 / 1e-69 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.004G175900 [exp] 202 / 1e-67 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.012G085200 [exp] 140 / 2e-43 AT4G34210 157 / 7e-50 SKP1-like 11 (.1) Potri.005G094800 [exp] 132 / 1e-39 AT3G21860 114 / 2e-32 SKP1-like 10 (.1) Potri.001G132300 [exp] 114 / 8e-33 AT1G75950 122 / 3e-36 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G086900 [exp] 107 / 2e-30 AT4G34210 130 / 1e-39 SKP1-like 11 (.1) Potri.016G028300 [exp] 87 / 8e-22 AT2G03170 79 / 6e-19 SKP1-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10041874 pacid=23146677 polypeptide=Lus10041874 locus=Lus10041874.g ID=Lus10041874.BGIv1.0 annot-version=v1.0 ATGTCAACGGAGAGGAAGTTCACCCTGCTGAGCAGCGACGGCCAGTCGTTCAAAATCGAGGAAGCAGTCGCGATGGAGTCACAGACGATCAAGCACATAA TCGAGGACGATTGCGCCAGTGGATCCATCCCTGTGCCAAACGTGGACAGCAAGATCCTTGCGAAGGCGATCGAGTACTGCAAGAAGCATGTCGAAACCCC TAAACCCGATGCTGAGCAGCTCAAGGCTTGGGAAGCCGATTTCGTCAAAGTCGAGCTGGCCACTCTCTACGATCTTATCCAGGCTGCCAACTACTTGAAC ATCAAGGGGCTATTGGATCTAACCTGCCAGACTGTAGCAGACATGATGAAGGATATGAGTCCAGAGGAGGCAAGGGCGTTTTTTAACATCAAGAATGATT TCACCCCTGAAGAAGAGGCAGCGGTTCGCAAGGAGAACCAGTGGGCATTCGAACCCTAA
AA sequence Show only first row Show all	>Lus10041874 pacid=23146677 polypeptide=Lus10041874 locus=Lus10041874.g ID=Lus10041874.BGIv1.0 annot-version=v1.0 MSTERKFTLLSSDGQSFKIEEAVAMESQTIKHIIEDDCASGSIPVPNVDSKILAKAIEYCKKHVETPKPDAEQLKAWEADFVKVELATLYDLIQAANYLN IKGLLDLTCQTVADMMKDMSPEEARAFFNIKNDFTPEEEAAVRKENQWAFEP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34210		ASK11	SKP1-like 11 (.1)		Lus10041874 [exp]	0	1
AT4G20040			Pectin lyase-like superfamily ...		Lus10036230 [exp]	5.5	0.9010
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	8.4	0.9265
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10038721 [exp]	12.5	0.9140
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	12.6	0.9199
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	16.6	0.9152
AT5G39670			Calcium-binding EF-hand family...		Lus10012199 [exp]	17.9	0.8458
AT5G12950			Putative glycosyl hydrolase of...		Lus10031258 [exp]	18.8	0.8967
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	19.7	0.9139
AT2G23810		TET8	tetraspanin8 (.1)		Lus10018792 [exp]	22.0	0.8892
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10040373 [exp]	22.6	0.8949

Compare expression of checked genes

Lus10041874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.