Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35920 582 / 0 MCA1 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) AT2G17780 489 / 7e-172 MCA2 mid1-complementing activity 2, PLAC8 family protein (.1.2.3.4) AT5G35525 73 / 3e-15 PLAC8 family protein (.1) AT1G14870 71 / 3e-14 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT3G18460 63 / 2e-11 PLAC8 family protein (.1) AT1G49030 62 / 8e-11 PLAC8 family protein (.1) AT3G18470 58 / 4e-10 PLAC8 family protein (.1) AT1G14880 57 / 2e-09 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT2G40935 56 / 7e-09 PLAC8 family protein (.1.2.3) AT3G18450 56 / 7e-09 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028421 [exp] 842 / 0 AT4G35920 634 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10025955 [exp] 707 / 0 AT4G35920 621 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10014256 [exp] 703 / 0 AT4G35920 625 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10004063 [exp] 61 / 8e-11 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10021696 [exp] 56 / 8e-09 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 55 / 2e-08 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 51 / 3e-07 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10008890 [exp] 49 / 9e-07 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10034298 [exp] 45 / 3e-05 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110000 [exp] 633 / 0 AT4G35920 600 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Potri.010G184700 [exp] 335 / 1e-111 AT4G35920 300 / 9e-99 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Potri.012G092200 [exp] 66 / 1e-12 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 66 / 3e-12 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G060900 [exp] 62 / 2e-10 AT1G49030 199 / 2e-62 PLAC8 family protein (.1) Potri.010G109100 [exp] 60 / 3e-10 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 59 / 3e-10 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 57 / 3e-09 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 54 / 4e-08 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.008G132775 [exp] 53 / 5e-08 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10041875 pacid=23146616 polypeptide=Lus10041875 locus=Lus10041875.g ID=Lus10041875.BGIv1.0 annot-version=v1.0 ATGGATCACAATTCTCATCCACTGCCGCTTTCTGTTTCCCTTCTCTCAACTGTTCCTGCTTTCTTTGTGCTGGGGAAGCTACCTCAACATCCCAACTTTT CCATTTATGCTAAACTGTTTCATTTGGACGTCAATAGGTTTAGTTTGTATACCGTTGGGGAAGGAAAGATGTCAGGTTGGGGTAATTTCGGGGAGATTGC AAATGTGGCACAGATCACTGGCCTTGATGCAGTGCGGCTAATTGGCTTGATAGTGAAAGCGGCGAGCACTGCCAGAATGCATAAGAAGAACTGCAGGCAG TTTGCTCAGCATCTCAAGTTGATTGGGGGTTTATTGGAGCAACTTAAGATCTCAGAGCTCAAGAAGTACCCTGTGACAAGGGAGCCGCTTGAACAGCTTG AAGATGCACTGAGGAGGTCTTATATTTTGGTGAATAGCTGCCAGGATAAAAGCTATCTCTACTTACTTGCTATGGGATGGAACATTGTCTACCAATTTCG AAAAGCACAGAACGAGATTGATCGCTACTTGAGGCTCATTCCTCTCATCACGCTGGTTGACAACACTCGAATTAGGGAGAGACTAGAAGATATCGAGAGG GATCAACGCGAGTACACGTTGGATGAAGAGGACAGAAAGGTTCAAGATTTCATCTTGAAATCAGAATCTGTAAAAGATCAAACTGCGGTGTTGAAGAAAA CGCTTTCGACTTCGTATCCGAACATGTGTTTCAATGAAGCTCTGCAAAAGGAAAGCGAGAAGCTACAGATGGAGCTACAAATGTCGCAAGCAAATATGGA TGTCAACCAATGTGAGGTTATCCAACACCTGCTGGAAGTGACAGAAACTGCAGCAGCAAATGTTCCCCCCGAGAAGAGTTCTCCTAAGAAGGCTTCAAAG AGATTGGAGCCTAATTTATCAGATGTGAGTGAGAAAGAAAGTACATTTGATCGCAGCTATCCCAGCAAAAAAGATTCTCGTACCGCCTCAAGAAACACCT CCTCAGTTTCTTCAGGGCAAGATTTGCTGACAAGAAGAGGTTCTACTTCTAGTCACGACGAAGAATGGCACACTGATTTGCTTGGTTGTTGTTCGGAACC TCTACTATGTATAAAGACACTCTTTTATCCTTGTGGTACATTCTCGAGGGTCGCCACTGCAGCTTCGGACAGGCACATGTCTTCAGGAGAAGCATGCAAC GAGTTGATGGCATATTCATTAATACTTTCGTGTTGCTGTTACACCTGTTGCATGAGAAGGAAGCTCCGCAACATGTTTAACATCTCTGGTGGCTTAGTCG ACGATTTTCTCTCACATTTGATGTGCTGTTGCTGCGCTCTTGTCCAAGAATGGCGAGAAGTCGAGCATCGAGGGGCTTATGGTCCTCAGAAGACGAAAAC AAGCCCTCCAGTGTCGCAGTCGATGGAATCCTAA
AA sequence Show only first row Show all	>Lus10041875 pacid=23146616 polypeptide=Lus10041875 locus=Lus10041875.g ID=Lus10041875.BGIv1.0 annot-version=v1.0 MDHNSHPLPLSVSLLSTVPAFFVLGKLPQHPNFSIYAKLFHLDVNRFSLYTVGEGKMSGWGNFGEIANVAQITGLDAVRLIGLIVKAASTARMHKKNCRQ FAQHLKLIGGLLEQLKISELKKYPVTREPLEQLEDALRRSYILVNSCQDKSYLYLLAMGWNIVYQFRKAQNEIDRYLRLIPLITLVDNTRIRERLEDIER DQREYTLDEEDRKVQDFILKSESVKDQTAVLKKTLSTSYPNMCFNEALQKESEKLQMELQMSQANMDVNQCEVIQHLLEVTETAAANVPPEKSSPKKASK RLEPNLSDVSEKESTFDRSYPSKKDSRTASRNTSSVSSGQDLLTRRGSTSSHDEEWHTDLLGCCSEPLLCIKTLFYPCGTFSRVATAASDRHMSSGEACN ELMAYSLILSCCCYTCCMRRKLRNMFNISGGLVDDFLSHLMCCCCALVQEWREVEHRGAYGPQKTKTSPPVSQSMES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	0	1
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	2.4	0.8627
AT2G30933			Carbohydrate-binding X8 domain...		Lus10007342 [exp]	2.8	0.8559
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	4.2	0.8450
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	7.9	0.8882
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	8.2	0.8082
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	8.5	0.8413
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	11.6	0.7908
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	12.7	0.8723
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	13.4	0.8346
					Lus10035688 [exp]	15.9	0.8422

Compare expression of checked genes

Lus10041875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.