Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35930 265 / 3e-88 F-box family protein (.1) AT1G61340 60 / 1e-10 F-box family protein (.1.2) AT4G05010 58 / 4e-10 F-box family protein (.1) AT4G21510 57 / 1e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028422 [exp] 490 / 1e-177 AT4G35930 267 / 3e-89 F-box family protein (.1) Lus10025956 [exp] 352 / 4e-123 AT4G35930 301 / 2e-102 F-box family protein (.1) Lus10018432 [exp] 54 / 1e-08 AT4G21510 102 / 3e-27 F-box family protein (.1) Lus10011255 [exp] 52 / 5e-08 AT4G21510 114 / 1e-31 F-box family protein (.1) Lus10022370 [exp] 50 / 1e-07 AT4G21510 67 / 1e-14 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110200 [exp] 340 / 4e-118 AT4G35930 332 / 4e-114 F-box family protein (.1) Potri.004G034400 [exp] 65 / 2e-12 AT1G61340 127 / 2e-37 F-box family protein (.1.2) Potri.011G042800 [exp] 64 / 4e-12 AT4G21510 115 / 4e-32 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041876 pacid=23146956 polypeptide=Lus10041876 locus=Lus10041876.g ID=Lus10041876.BGIv1.0 annot-version=v1.0 ATGGGGAAACTGTTTCCAAAAGATGGGGACTCAATTACACCCAGACAGAGGCGATTGCGGTGTTCGACTGGAAAGTACCTGAAACCTGGTGCGCTAGCTC GGCTGCGGAATAGCAAAGCATCAATGAGAAAGTCATGCGCTGATGTCGGCATAAAGAGGGTTTCTTTGTTTGGCACCACTAAATTAGATGATGATAATCT TGCGATTGAAGATAAAGTTGCTCCGGTTGAGAAGAGTCCATTAATTCTGTCGCCTGTGGATCTGCTTAAACAGAAGCCCTTCATGAGAACACCTAAGACT CCTCGAGCTGAATATGGTGGATCTGAATCAAGGCTAGAGTCTCTTCCCATGGAGTTGTTGGTTAAAGTATTATGTCACCTGCACCATGACCAGCTTAGTG CAGTCTTCAAGGTTTCCAATAGGATTCGAAAAGCTGCTGTGATTGCAAGACAGTTCCATTTTGATTATACCACCCCAGATCGTTCTAGACAAGAGATGCT AAGAACAATAACACCACTCCCCATAGAAAACTGCCCTTTTGTTGGATACTTGAGAGACAATTTCAGGAAGGGAGATGGAAAGGCCATCTTCATACCGATC CCACATACTCCAAAAGCACCAAGACACGGCCCTCGACCACCTTCCAAACTCAAAATCGCAGATATAAAGCAGACTGCAGCTGTTCTGTTTCAGGATCCCG CCTTGCCCCCCGCTCCAAGATGTGTAGTGGTTTCTGGTTTGTCAAAACCCATATGCAAGTCTTTGGCCTCTAATCGTGTTCTCTTCTATGAGGATGAGCT GTGCCACGCTGTTGCTCAAAATAAGCTTCTCTAG
AA sequence Show only first row Show all	>Lus10041876 pacid=23146956 polypeptide=Lus10041876 locus=Lus10041876.g ID=Lus10041876.BGIv1.0 annot-version=v1.0 MGKLFPKDGDSITPRQRRLRCSTGKYLKPGALARLRNSKASMRKSCADVGIKRVSLFGTTKLDDDNLAIEDKVAPVEKSPLILSPVDLLKQKPFMRTPKT PRAEYGGSESRLESLPMELLVKVLCHLHHDQLSAVFKVSNRIRKAAVIARQFHFDYTTPDRSRQEMLRTITPLPIENCPFVGYLRDNFRKGDGKAIFIPI PHTPKAPRHGPRPPSKLKIADIKQTAAVLFQDPALPPAPRCVVVSGLSKPICKSLASNRVLFYEDELCHAVAQNKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	0	1
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	1.7	0.9614
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	2.0	0.9653
AT2G37960			unknown protein		Lus10021116 [exp]	2.8	0.9634
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	6.0	0.9470
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	8.2	0.9577
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	8.4	0.9471
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10029273 [exp]	8.9	0.9471
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	9.9	0.9443
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	11.4	0.9507
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10042869 [exp]	11.4	0.9293

Compare expression of checked genes

Lus10041876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.