Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14820 319 / 1e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 305 / 6e-102 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75890 303 / 2e-101 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G75900 294 / 9e-98 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 293 / 8e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 285 / 2e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 285 / 2e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 285 / 5e-94 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G20132 283 / 5e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 278 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028423 [exp] 665 / 0 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 472 / 4e-163 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 449 / 5e-159 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014257 [exp] 427 / 4e-146 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020010 [exp] 399 / 9e-135 AT2G19080 308 / 1e-99 metaxin-related (.1) Lus10013572 [exp] 334 / 1e-113 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 330 / 5e-112 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 329 / 2e-111 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 306 / 3e-102 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 341 / 1e-115 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 330 / 5e-112 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 270 / 3e-88 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 267 / 5e-87 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 265 / 2e-86 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.014G160100 [exp] 264 / 4e-86 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 263 / 2e-85 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 262 / 7e-85 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 260 / 1e-84 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 259 / 4e-84 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10041877 pacid=23146938 polypeptide=Lus10041877 locus=Lus10041877.g ID=Lus10041877.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCTGCTGTTGCGTTCCTCTTTTTTGTATTCATCAGTTCAGCTGCTGACATGATTGTTACAGCAAATAGCAGCAGTATTAATGGCGGGGCAA CTGTGCCAGCAGTTTTCGTCTTTGGTGACTCTTTAGTCGACACTGGGAACAATAACTACATCCCAATCACCATTGCCAAGAGCAACTTCCCTCCTTATGG CAGAGACTTCACTGATGGATTCCCAACCGGGAGGTTCAGCAATGGAAGAAGTGTCTCTGACTTCATTGCTCAAATCTTTGGAGTGAAAACGCTGCTGCCG CCGTATCTGGATCCTACGTTAGAGCTTGAGCAACTGCTTACCGGTGTGTCTTTTGCTTCTTCTGGTGCTGGTTACGACCCTCACACCTCCCAGTTAGCTA ATGCAATACAAATCACAGAACAGTTAGATTTCCTAAGAGAGTACATCCAGAAGATGAATGCAGCTATTGGGGAAGAAAGAACAGCATCTATTATATCCCA GAGTGCATACATAAGTGTAATAGGAAGCAATGATGTTTCCAATATGTACCCTTTGGTGCAGGATTTCTACGACGAGAACTCCTACACTGATCGGATGATC AGCCTGGCTTCAGACTTTTATCAGCAACTGTATAAACTTGGAGCAAGGAGAATTGGGTTGCTGACATTACCTCCAACAGGCTGTGCACCCGCCATTCGAG TTCTCGATGGAGGACCGAATAGGGTTTGTTACGAAAGCCTGAACAGACGTGTCAGGCTTTTCAACTCCAAGCTGTCTTTGTTGGTTGAAAAGTTGAATGC AGAGCTTCCAAGTGCCAACTTCGTGCTCTTTGACCTCTACAATCCTGTCATTGCCCTTATACAAAATCCTGCTCCATATGGGTTCAAAGAGGTCTCGAGG GGGTGCTGCGGAACTGGAAATATCGAGGTTGCTGTGCTGTGTATACTTCCAGGCACTTGCTCTGACGCCTCCAAATACCTGTTCTGGGACAGTTATCATC CCACTGAAACAGCATCTGGGATACTGGTACATCAAGTTCTTGGTCCAAAGTTGAGGCAACTGGTTCAATAA
AA sequence Show only first row Show all	>Lus10041877 pacid=23146938 polypeptide=Lus10041877 locus=Lus10041877.g ID=Lus10041877.BGIv1.0 annot-version=v1.0 MAAPAVAFLFFVFISSAADMIVTANSSSINGGATVPAVFVFGDSLVDTGNNNYIPITIAKSNFPPYGRDFTDGFPTGRFSNGRSVSDFIAQIFGVKTLLP PYLDPTLELEQLLTGVSFASSGAGYDPHTSQLANAIQITEQLDFLREYIQKMNAAIGEERTASIISQSAYISVIGSNDVSNMYPLVQDFYDENSYTDRMI SLASDFYQQLYKLGARRIGLLTLPPTGCAPAIRVLDGGPNRVCYESLNRRVRLFNSKLSLLVEKLNAELPSANFVLFDLYNPVIALIQNPAPYGFKEVSR GCCGTGNIEVAVLCILPGTCSDASKYLFWDSYHPTETASGILVHQVLGPKLRQLVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10041877 [exp]	0	1
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10006625 [exp]	4.5	0.7563
AT1G06980			unknown protein		Lus10020386 [exp]	25.0	0.7484
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10029346 [exp]	25.2	0.7553
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	25.2	0.7645
AT3G58760			Integrin-linked protein kinase...		Lus10037851 [exp]	41.7	0.7542
					Lus10016269 [exp]	48.8	0.7362
					Lus10024863 [exp]	49.2	0.6726
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	53.6	0.6810
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Lus10022820 [exp]	57.3	0.6752
					Lus10042085 [exp]	63.3	0.6991

Compare expression of checked genes

Lus10041877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.