Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 234 / 1e-72 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 232 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 229 / 1e-70 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G42170 226 / 3e-69 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 218 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G43550 210 / 4e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 209 / 9e-63 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT5G63170 207 / 2e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 206 / 4e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 206 / 4e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028425 [exp] 454 / 4e-154 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 266 / 6e-85 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 258 / 1e-81 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 257 / 2e-81 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 247 / 2e-77 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 226 / 3e-69 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 223 / 2e-68 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 223 / 3e-68 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 223 / 5e-68 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 276 / 2e-88 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 270 / 2e-86 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 202 / 3e-60 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 196 / 3e-58 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 194 / 2e-57 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.011G062000 [exp] 193 / 9e-57 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 192 / 1e-56 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 191 / 3e-56 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 191 / 1e-55 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 189 / 2e-55 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10041878 pacid=23146762 polypeptide=Lus10041878 locus=Lus10041878.g ID=Lus10041878.BGIv1.0 annot-version=v1.0 ATGATGAGGATCTTCTTGTATTGTGTGATGATCATGGTTTCACAATCCATCAACATTTCAGCTAGTCCTCCACCACATAAAAAAGCACCAGCAGTTTTGA TATTCGGAGACTCGATTCTGGATTCGGGCAACAACAACTACCTTAAGACCATAGTCAAATGCGACTTCCCGCCTTACGGGAGGGATTTCGTCACTAGGAA GCCTAGCGGCAGGTTCTGCAATGGGAAAGTCCCCTCTGACTTTGCAGCCAGCTATATTGGGGTGAAGGACTTACTCCCACCCTCTCTCGATCCGACTCTG ACAATTCATGACCTCGCTACCGGTGTCAGTTTCGCTTCTGGCGGCTCTGGTTACGATCCTGCAACACCCCATGGCGCGTCTGTTCTGTCTCTGTCGGACC AGTTGGAGCTGTTCAAGGAGTACAAAGGCAAGTTGAGGAAAGGACTGGGGACAGAAAGAGCAGCAACCATTGTAGCTCAAAGTGCATACTTGATCGGAGT AGGGAGCGACGACCTAGTCAACACCTACTTCCCTTCCCCTATCAAAAGACTGCAGTACGACGTCGGATCGTACACCGATTTGATGGCCACCTATGCTTCA AGCTTCTACGAGGAACTTTACAGGCTTGGAGCAAGAAAGATAGGGGTACTGAGCTTACCACCAGTAGGGTGCCTTCCATCACAAAGAACACTTGGAGGAG GAATCAACAGGAACTGCTCAGAGATGTATAACCAAGCAGCTCAGCTCTTCAACTCCAAGCTCTCCTCACTCCTTCAATCCCTCTCCCACAAACATCCCGA CGGACTCTTCCTCTACTTGGATGTGTACGACAGACTCACTTCGATGGTCCGAAATCCTTCCCAGTATGCTGAAGTCCTTGGTGTAAAAGAGCTGCTGCCA CCATATCTAGATCCACACTTGTACCTTCAACAGCTACTTACCGGCGTGTGTTTCGCTTCTGGCGGCTCTGGTTACGACTCTCGCACATCCCAATTGACTA CTGCAATACCAATCTTGGGGCAGCTAGACATGCTAAGAGAGTACATCAGGAAGATCAATTCAAGTGTCGGGGAAGAAAGAACAGGATCCATTATATCAGA AAGTGCATACATAACTTTCCTGGGAAGCAATGATATTACAAACCCTTTGCTTAGTAACCTGTATGATGAAGAATCACACACGGATCTCATCATCCATCAG GCTCTACACTTGTACAAGATGAATGAAGAGCTTCCAGGAGTCAAGATGGTCCTTTTTTACCTCTACAATCCATTGCTTTCCCTCATACAAAACCCTGCTC CATATGGGATTGAAGAGGTTAAAAGAGGATGTTGTGGGACAGGGAATCTTGAGTTTGGTGTACTGTGTGCTATTCCTGGGACTTGTCCTGATGCTTCCGA GTATTTGTTCTGGGACACAGTTCATCCTACTGATAAAGCATCTAAAATCCTGACATATCAAGCTCTAACTGAATATTTGAGTAAATTTTTCTGA
AA sequence Show only first row Show all	>Lus10041878 pacid=23146762 polypeptide=Lus10041878 locus=Lus10041878.g ID=Lus10041878.BGIv1.0 annot-version=v1.0 MMRIFLYCVMIMVSQSINISASPPPHKKAPAVLIFGDSILDSGNNNYLKTIVKCDFPPYGRDFVTRKPSGRFCNGKVPSDFAASYIGVKDLLPPSLDPTL TIHDLATGVSFASGGSGYDPATPHGASVLSLSDQLELFKEYKGKLRKGLGTERAATIVAQSAYLIGVGSDDLVNTYFPSPIKRLQYDVGSYTDLMATYAS SFYEELYRLGARKIGVLSLPPVGCLPSQRTLGGGINRNCSEMYNQAAQLFNSKLSSLLQSLSHKHPDGLFLYLDVYDRLTSMVRNPSQYAEVLGVKELLP PYLDPHLYLQQLLTGVCFASGGSGYDSRTSQLTTAIPILGQLDMLREYIRKINSSVGEERTGSIISESAYITFLGSNDITNPLLSNLYDEESHTDLIIHQ ALHLYKMNEELPGVKMVLFYLYNPLLSLIQNPAPYGIEEVKRGCCGTGNLEFGVLCAIPGTCPDASEYLFWDTVHPTDKASKILTYQALTEYLSKFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	0	1
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	1.4	0.9617
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	1.4	0.9575
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	2.0	0.9309
AT1G01300			Eukaryotic aspartyl protease f...		Lus10039126 [exp]	2.4	0.9328
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	3.3	0.9015
AT4G27290			S-locus lectin protein kinase ...		Lus10006772 [exp]	3.5	0.9241
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	3.7	0.9159
AT5G25840			Protein of unknown function (D...		Lus10037569 [exp]	4.1	0.8881
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	5.1	0.8988
AT1G74875			unknown protein		Lus10023768 [exp]	5.7	0.8943

Compare expression of checked genes

Lus10041878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.