Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17790 1261 / 0 ZIP3, VPS35A ZIG suppressor 3, VPS35 homolog A (.1) AT1G75850 1207 / 0 VPS35B VPS35 homolog B (.1) AT3G51310 1149 / 0 VPS35C VPS35 homolog C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028427 [exp] 1588 / 0 AT2G17790 1270 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Lus10013565 [exp] 1218 / 0 AT1G75850 1306 / 0.0 VPS35 homolog B (.1) Lus10017272 [exp] 1214 / 0 AT1G75850 1304 / 0.0 VPS35 homolog B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110600 [exp] 1410 / 0 AT2G17790 1249 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Potri.002G019400 [exp] 1245 / 0 AT1G75850 1271 / 0.0 VPS35 homolog B (.1) Potri.005G242100 [exp] 1228 / 0 AT1G75850 1309 / 0.0 VPS35 homolog B (.1) Potri.007G061520 [exp] 120 / 2e-32 AT1G75850 119 / 8e-33 VPS35 homolog B (.1) Potri.007G061540 [exp] 0 / 1 AT2G17790 0 / 1 ZIG suppressor 3, VPS35 homolog A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03635 [flax] [poplar] Vps35 Vacuolar protein sorting-associated protein 35
Representative CDS sequence Show only first row Show all	>Lus10041880 pacid=23146845 polypeptide=Lus10041880 locus=Lus10041880.g ID=Lus10041880.BGIv1.0 annot-version=v1.0 ATGATCGCCGACGGCGTCGAAGACGAAGAAAAATGGCTGGCGGCAGGGATCGCTGGCCTGCAGCAGAACGCCTATCACATGCACCGTGCTCTGGATACGA ACAATCTCAGAGATGCTTTGAAGTACTCGGCGCAGATGCTTTCCGAGCTCCGCACTTCCAAGCTTTCCCCTCACAAGTATTATACACTATACATGCGTGC GTTTGATGAACTGAGGAACCTTGAGATGTTCTTTAAGGAAGAAACGCGCCGTGGGTTCTCGATCGTCGAGCTCTATGAACTTGTGCAGCATGCTGGTAAC ATATTGCCTAGACTGTATCTCTTATGCACTGTGGGATCTGTGTACATCAAATCTAAAGAAGCTCCAGCCAAGGATGTCCTTAAAGATCTAGTGGAAATGT GCCGTGGCATTCAACATCCTGTACGTGGGCTCTTTTTAAGGAGTTACCTTTCTCAAATCAGCAGGGATAAATTAACTGATATAGGTTCTGAAGATGAAGG AGATTCTGATATGGTCGTGGACGCTGTTGAGTTTTTGCTCCAAAATTTCACAGAGATGAACAAGCTATGGGTGCGGATGCATCATCAGGGACCTGCCCGT GAAAGGGAGAGGCGGGAGAAAGAAAGGAACGAGCTGCGGGATCTTGTTGGGAAGAACTTGCACGTCCTTAGTCAGATAGAAGGCGTTGACCTTGATATGT ACAGAGACACAGTGCTTCCCAGAGTCCTTGAACAGGTTGTAAACTGTAAGGATGAGATCGCTCAGTTCTATCTGATGGATTGCATTATTCAAGTCTTTTC TGATGAGCATCATTTACAAACTCTAGAAGTTCTACTTGGTGCTTGTCCCCAGCTCCAGCCATCTGTTGATATAATGACAGTGTTGTCTAGATTGATGGAA CGCCTATCTAATTATGCTGCCTCCAGCTCTGAAGTTTTGCCCGAGTTCTTGCAAGTTGAAGCCTTTTCAAAGTTAAACAATGCTATAGGAAAGGTGATTG AAGCACAGCCAGATATGCCCATATTTGGAGCTGTTACATTGTATTCATCTCTTCTTAAATTTACGCTTCATGTGCACCCTGACAGACTGGATTATTCTGA TCAAGTTTTGGGTGCCTGTTATAAGAAACTACAGAGCGTGGGAAAGGTTGAAGACAGCAAAGCAACAAAGCAAATCGTGGCACTTTTGAGTGCACCATTA GAGAAATATAACGATATTGTCACTGCTTTGAAGCTTTCCAATTATCCTCGTGTGATGGAGTATCTAGACTCTGAAACAAGTAAAATCATGGCAACTGTTA TTATTCAAAGTATTATGAAGAATAGCACACACATTTCTAGTGCTGACAAGGTTGAGGCATTATTTGAATTGATGAAAGGGCTTATGAAGGATTTGGACGA TGCCACTGTAGAGGTTGACGAAGATGATTTTAAGGAGGAGCAGAATTCTGTTGCACGTCTTATTCAGATGTTGGTAAATGATGACCCAGAGGAAATGTTC AAGATCGTATGCGTTGTGAGGAAGCATATAATGAATGGAGGGCCAAAGCGTCTACCATTTACCATTCCTCCCTTTGTCTTCTCTTCCTTAAAGTTGGTTA GGCAGTTGCAAGGGCAAGATGAGAATCCCTTTGGTGAAGAGGCGGCAACGCCAAAAACAATTTTTCAGCTTTTGAATCAGACTATTGAGGTTCTGCCGAC TATCCCAACACCTGAACTGGCCTTAAGATTGTACCTAGAATGTGCAGAGGCTGCAAATGACTCTGATTTGGAGCCTGTTGCATACGACTTTTTCACCCAA GCTTATATTCTATACGAGGAGGAAATATCAGATTCCAAAGCGCAGGTGACTGCTTTGCATCTAATAATAGGGACTCTTCAGAGGATGCATGTGTTTGGTG TTGAGAACCGTGATACCTTGACCCATAAAGCTACAGGGTATTCCGCTAAGCTTTTAAAGAAGCCTGATCAATGTAGGGCCGTGTATGGGTGTGCTCATCT GTTCTGGGTTAATGATCAGGATAACATGAAAGATGGCGAGAGGGTATTAATATGCCTAAAGCGTGCTTTGAGAATAGCCAATGCTGCTCAACAAATGTCT AATGCCGCACGGGGTAGCACAGGGTCCGTCACTCTCTTCATTGAGATTCTAAACAAGTATCTCTACTTCTATGAGAAGGGAAATCAGCACATTACAGTCG ACGCAGGCAAAAGCCTAATTGAACTGATCACGACTGAGATGCCAAATGATGCTGGGTCGGGTGCACCAGATCCAGCGGCAGAGGCTTATTTTGCAAGCAC GCTACGATACATCCAGTTCCAGAAACAGAAGGGCGGAGTAATTGGTGAAAGATACGAAGCTCTCAGCACCACAGTCAAAGAATAG
AA sequence Show only first row Show all	>Lus10041880 pacid=23146845 polypeptide=Lus10041880 locus=Lus10041880.g ID=Lus10041880.BGIv1.0 annot-version=v1.0 MIADGVEDEEKWLAAGIAGLQQNAYHMHRALDTNNLRDALKYSAQMLSELRTSKLSPHKYYTLYMRAFDELRNLEMFFKEETRRGFSIVELYELVQHAGN ILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLTDIGSEDEGDSDMVVDAVEFLLQNFTEMNKLWVRMHHQGPAR ERERREKERNELRDLVGKNLHVLSQIEGVDLDMYRDTVLPRVLEQVVNCKDEIAQFYLMDCIIQVFSDEHHLQTLEVLLGACPQLQPSVDIMTVLSRLME RLSNYAASSSEVLPEFLQVEAFSKLNNAIGKVIEAQPDMPIFGAVTLYSSLLKFTLHVHPDRLDYSDQVLGACYKKLQSVGKVEDSKATKQIVALLSAPL EKYNDIVTALKLSNYPRVMEYLDSETSKIMATVIIQSIMKNSTHISSADKVEALFELMKGLMKDLDDATVEVDEDDFKEEQNSVARLIQMLVNDDPEEMF KIVCVVRKHIMNGGPKRLPFTIPPFVFSSLKLVRQLQGQDENPFGEEAATPKTIFQLLNQTIEVLPTIPTPELALRLYLECAEAANDSDLEPVAYDFFTQ AYILYEEEISDSKAQVTALHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYGCAHLFWVNDQDNMKDGERVLICLKRALRIANAAQQMS NAARGSTGSVTLFIEILNKYLYFYEKGNQHITVDAGKSLIELITTEMPNDAGSGAPDPAAEAYFASTLRYIQFQKQKGGVIGERYEALSTTVKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	3.5	0.8430
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	4.0	0.8489
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043127 [exp]	4.5	0.7863
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	4.9	0.8353
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	7.1	0.8099
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	7.1	0.8379
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	7.5	0.8163
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	11.0	0.8036
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	11.5	0.7608
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010295 [exp]	11.8	0.8170

Compare expression of checked genes

Lus10041880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.