Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66120 597 / 0 3-dehydroquinate synthase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028429 [exp] 742 / 0 AT5G66120 640 / 0.0 3-dehydroquinate synthase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110900 [exp] 616 / 0 AT5G66120 624 / 0.0 3-dehydroquinate synthase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0224 [flax] [poplar] DHQS PF01761 [flax] [poplar] DHQ_synthase 3-dehydroquinate synthase
Representative CDS sequence Show only first row Show all	>Lus10041882 pacid=23146617 polypeptide=Lus10041882 locus=Lus10041882.g ID=Lus10041882.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCACAGCCACCGCCATCTCCCTCTCCCTCTCCACCGCCACCCGCAGGGACAGTCACTCGCCGGATTCCTGTCTCAGATTTCCCAAGCCCA ACGCCGTCTCCCTACGTTTGAGACCGACTGGAGCATCGTTGTCAACTTGCTCTTCAATCAGGTCTAGCAGGATTCGCGCCACTTCTGCACCTGCTATGGA CCAATCGCTCAACGAAGCTGGTGCTAATGTGCCTACTGTTGTCGATGTCGATTTGGGGAACCGGAGCTACCCGATCTACATCGGGTCCGGGCTTCTTAAT CAGCCTGAGCTTCTTCAAAGGCATGTCCGCGGAAAGAGGGTACTCGTTGTGACTAATGAAACGGTAGCTCCGCTGTACTTGGATAGAGTCGTTGAGGCAT TGACACGAGGGAACCCAAATGTGTCTGTTGAGAGTGTCATTTTGCCGGATGGTGAGAAGTATAAGAACATGGATGTTCTGATGAAAGTATTCGATAAGGC CATGGAGACAAGGTTGGATAGGAAGTCTACATTTGTTGCTTTAGGAGGAGGAGTCATTGGCGACATGTGTGGATTTGCAGCTGCTGCTTACTTGCGGGGT GTTAATTTCATTCAGATCCCCACAACTCTTATGGCACAGGTAGATTCTTCTGTTGGAGGCAAAACTGGTATAAACCACCCGCTTGGGAAGAACATGATTG GCGCATTTTACCAGCCCCAGTGTGTTCTGATAGATACTGATACGCTGAATACGTTGTCGGAGAGGGAACTTGCATCGGGTGTTGGTGAGGTTGTGAAGTA TGGACTGATTCGTGATGCCGAATTCTTCGAGTGGATGGAGAAGAATATTGACTTACTCTTGTGTAGAGATCCAAGTGCTTTAGCTTATGCCATCAAACGC TCATGTGAAAACAAGGCCGAGATCGTGTCCCTGGACGAGAAAGAAAGTGGACTGCGTGCAACTTTGAACTTAGGTCACACATTCGGCCATATTATGGCTG CGGACATGTCATACCGGCTCGGTTGGATTGATGATTCCCTCGTAAAACGAGTATACAAAATTCTAGAGCAGGCTAAGCTACCTGTTAGTCCACCAGAAAC AATGACTGTAGACATGTTTCGATCCATCATGGCCGTTGATAAGAAGGTTGCCGATGGGGTGCTAAGGCTAATCCTCCTCAAAGGTCCTCTTGGTAACTGT GTGTTTACCGCAGATTACGACAGAAAAGCACTTGAGGATACACTGCAGGCGTTTTGCAAATCATGA
AA sequence Show only first row Show all	>Lus10041882 pacid=23146617 polypeptide=Lus10041882 locus=Lus10041882.g ID=Lus10041882.BGIv1.0 annot-version=v1.0 MASSTATAISLSLSTATRRDSHSPDSCLRFPKPNAVSLRLRPTGASLSTCSSIRSSRIRATSAPAMDQSLNEAGANVPTVVDVDLGNRSYPIYIGSGLLN QPELLQRHVRGKRVLVVTNETVAPLYLDRVVEALTRGNPNVSVESVILPDGEKYKNMDVLMKVFDKAMETRLDRKSTFVALGGGVIGDMCGFAAAAYLRG VNFIQIPTTLMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLSERELASGVGEVVKYGLIRDAEFFEWMEKNIDLLLCRDPSALAYAIKR SCENKAEIVSLDEKESGLRATLNLGHTFGHIMAADMSYRLGWIDDSLVKRVYKILEQAKLPVSPPETMTVDMFRSIMAVDKKVADGVLRLILLKGPLGNC VFTADYDRKALEDTLQAFCKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66120			3-dehydroquinate synthase, put...		Lus10041882 [exp]	0	1
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	5.2	0.9739
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	5.8	0.9698
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	7.5	0.9690
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	7.9	0.9652
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	9.5	0.9633
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	10.2	0.9692
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	10.4	0.9673
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10011375 [exp]	11.7	0.9239
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	12.7	0.9670
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	13.8	0.9674

Compare expression of checked genes

Lus10041882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.