Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66130 63 / 3e-12 ATRAD17 RADIATION SENSITIVE 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028430 [exp] 130 / 4e-36 AT5G66130 532 / 0.0 RADIATION SENSITIVE 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111000 [exp] 110 / 8e-29 AT5G66130 607 / 0.0 RADIATION SENSITIVE 17 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041883 pacid=23146984 polypeptide=Lus10041883 locus=Lus10041883.g ID=Lus10041883.BGIv1.0 annot-version=v1.0 ATGCTCAGAACTCTCTTGGGCCAAACAACACGGGTCCAGAAGTTCCATCAGCTTGCATCGTTCTCTTTGCTGCTCCTCACTCTCTCTACACAAAACCAGA GTGCGCCATTTCTCTCTTCTAGATTTGTACATTTACAGTCAAGTAGTTCATGGGTTTCTGTTGAATTGATATTTCTGGCTCCATTTCATGCACGCTATTC TTTTGCAGTTTTAGATTTCATAAGTGATGAAGCGACGGATGATGCCTCAGATGTTGCCGCTTATTTAAGCGATGCAGACATGCTCCTTTCTTCCTTCCGA GGACAGCTGGCCAGATACAACGAGGCGGAGAATGTTCTTCAGTCAGCTGCTGCATCAGTCGCTTGTCGTGGTGCGCTCTTTGGGAATTCTCATCCTTCAC CTCGCATGTCATTATTGTATGCTCCAAGCAGTTTGATGTAG
AA sequence Show only first row Show all	>Lus10041883 pacid=23146984 polypeptide=Lus10041883 locus=Lus10041883.g ID=Lus10041883.BGIv1.0 annot-version=v1.0 MLRTLLGQTTRVQKFHQLASFSLLLLTLSTQNQSAPFLSSRFVHLQSSSSWVSVELIFLAPFHARYSFAVLDFISDEATDDASDVAAYLSDADMLLSSFR GQLARYNEAENVLQSAAASVACRGALFGNSHPSPRMSLLYAPSSLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10041883 [exp]	0	1
AT3G57930			unknown protein		Lus10031806 [exp]	5.6	0.8724
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012466 [exp]	9.8	0.8213
AT1G14930			Polyketide cyclase/dehydrase a...		Lus10042490 [exp]	10.7	0.8492
AT5G22340			unknown protein		Lus10043400 [exp]	22.0	0.8595
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	24.7	0.8344
AT4G02725			unknown protein		Lus10014675 [exp]	26.2	0.8579
AT5G22340			unknown protein		Lus10034185 [exp]	30.2	0.8554
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	30.6	0.8346
					Lus10033439 [exp]	33.7	0.8039
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10040637 [exp]	34.2	0.7542

Compare expression of checked genes

Lus10041883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.