Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51290 598 / 0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 299 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 272 / 4e-83 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 232 / 6e-69 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT5G25590 186 / 2e-51 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 159 / 1e-43 unknown protein AT1G21740 155 / 1e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 137 / 2e-34 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 126 / 5e-31 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 122 / 9e-30 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028431 [exp] 800 / 0 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10042910 [exp] 272 / 6e-85 AT3G60320 727 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10036155 [exp] 253 / 8e-77 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10028207 [exp] 233 / 4e-71 AT3G60320 570 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 190 / 5e-53 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 186 / 1e-51 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025777 [exp] 185 / 2e-51 AT1G52320 652 / 0.0 unknown protein Lus10022116 [exp] 185 / 2e-51 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10035887 [exp] 183 / 1e-50 AT1G52320 747 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112300 [exp] 661 / 0 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 655 / 0 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 321 / 7e-102 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 310 / 1e-97 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 196 / 2e-55 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 196 / 3e-55 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.001G181100 [exp] 192 / 2e-54 AT1G52320 615 / 0.0 unknown protein Potri.004G177200 [exp] 192 / 4e-54 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 187 / 2e-52 AT1G52320 626 / 0.0 unknown protein Potri.006G244100 [exp] 184 / 4e-51 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10041884 pacid=23146820 polypeptide=Lus10041884 locus=Lus10041884.g ID=Lus10041884.BGIv1.0 annot-version=v1.0 ATGGTGGTTTCAAGGAACAGTAAAGATCTGGTGGAGATAGTGAAGGAAGTGGATGAGTATTTTCTTAAAGCAGCTGATGGTGGAGCCCAGCTTTCTCTGC TGCTTGAAGTTCCAACTTCTGGCTTCTCCTCCTCCGCTCAAATCAAAGGAGGTAAAGTTTATAACTATGGCTGCAATTTGACAAGTCCATCTTCATGGGC ATGGAGTTCAAGTGGGATTACGGGGAAAATGGCTGAAGAAATTGTGATTAGCAGCAGCAACATTAATGGAGGAGGATCATTCAGCCATTGTTCAACTGTG GAGAGGATGTATGCTTGGGAGAAGAAACTGTTCCAGGAGGTTAAGAACGCTGAGAGCATAAAGATGGAGCATGAGAAGAAGGTGGGATTGTTTAGGAAGC TGGAGATAAAGAGAGCTGATTATCTAAAGACTGAGAAAACAAAGAAGGAAGTTGAGAAATTGGAGTCCCAAATGATGGTTGCTTCCCAAGCCATTGAATC CACCTCTTCTGAGATCATCAAGTTGAGAGAATCTGAGCTCTACCCTCAGCTCCTTGAGCTAGTCAAAGGGCTGATGTGCATGTGGAGGAGCATGTACGAG TCCCACCAGGTCCACACTCACATCGTACAACAGCTCAAATACCTCAACACAATCCCATCTACCGAGCCAACTTCCGAGATTCACAGGCAGTCGACTCTCC AGCTCGAGCTCCAAGTCCAGCAATGGCACCATTCCTTCTGCAACCTGGTGAAATCCCAGCGCGACTACATCCAGTCCTTGACAAGCTGGCTCCGGCTGAG TCTATTCCAGTTCAGCAAAAGTCCGCTCTCCAAAACCATTCAGGATTCCAAAATTTACTCCCTTTGCGACGAGTGGCTCCACGCCATCGATCGTATGCCG GACAAAGTTGCCTCTGAAGGCATCAAGAGCTTCTTGACTGTAATCCACGCGATAGTGGTCCAGCAAGGGGAAGAGCATAAGCAAAAGAAGAAGCTGGACT CTGCATTGAAGGAGTTTGAGAAGAAGGCAGCTGAGCTAAGGTCGCTCGAGACCAAGTATGGACCGTATTCGATTCCCGAAAGTTCTTCGGGTAGCAGTAG CAGAAGCAAGAACCCGGTTATGGAGAAGCGGGCGAAAGTGGAGATCTTGAGAGCTCGAGCTGAGGAGGAGAAGACGAAGCACGAGAAGTCGGTGAGCATC ACGAGGGCAATGACGTTGAACAATCTACAGATGGGATTCCCGCACGTGTTTCAGGCGATTGTCGGGTTTTCGAGTGTTTGTATGCATGCGTTTGAGTCTG TATACAACCAAGCCAAAAGCGCTGGGGAAGAGCATGAAGTAAAGAGAATAATGGGCTAG
AA sequence Show only first row Show all	>Lus10041884 pacid=23146820 polypeptide=Lus10041884 locus=Lus10041884.g ID=Lus10041884.BGIv1.0 annot-version=v1.0 MVVSRNSKDLVEIVKEVDEYFLKAADGGAQLSLLLEVPTSGFSSSAQIKGGKVYNYGCNLTSPSSWAWSSSGITGKMAEEIVISSSNINGGGSFSHCSTV ERMYAWEKKLFQEVKNAESIKMEHEKKVGLFRKLEIKRADYLKTEKTKKEVEKLESQMMVASQAIESTSSEIIKLRESELYPQLLELVKGLMCMWRSMYE SHQVHTHIVQQLKYLNTIPSTEPTSEIHRQSTLQLELQVQQWHHSFCNLVKSQRDYIQSLTSWLRLSLFQFSKSPLSKTIQDSKIYSLCDEWLHAIDRMP DKVASEGIKSFLTVIHAIVVQQGEEHKQKKKLDSALKEFEKKAAELRSLETKYGPYSIPESSSGSSSRSKNPVMEKRAKVEILRARAEEEKTKHEKSVSI TRAMTLNNLQMGFPHVFQAIVGFSSVCMHAFESVYNQAKSAGEEHEVKRIMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	0	1
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	1.0	0.9625
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	1.4	0.9505
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10028104 [exp]	3.3	0.9276
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	3.5	0.9430
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	5.2	0.9431
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	8.5	0.9339
AT1G71760			unknown protein		Lus10030260 [exp]	8.8	0.9335
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	9.5	0.9348
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	12.2	0.9041
AT4G31880			unknown protein		Lus10017121 [exp]	14.1	0.9197

Compare expression of checked genes

Lus10041884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.