Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51290 90 / 1e-21 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 61 / 1e-11 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 59 / 4e-11 Protein of unknown function (DUF630 and DUF632) (.1) AT5G25590 58 / 1e-10 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 58 / 1e-10 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G52320 55 / 2e-09 unknown protein AT4G39790 51 / 4e-08 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 50 / 4e-08 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 42 / 6e-05 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028431 [exp] 173 / 1e-51 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10022116 [exp] 61 / 2e-11 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10036155 [exp] 58 / 1e-10 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025550 [exp] 58 / 2e-10 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 58 / 2e-10 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10035887 [exp] 54 / 2e-09 AT1G52320 747 / 0.0 unknown protein Lus10025777 [exp] 54 / 4e-09 AT1G52320 652 / 0.0 unknown protein Lus10037902 [exp] 49 / 1e-07 AT5G25590 105 / 2e-25 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056700 [exp] 103 / 8e-27 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G112300 [exp] 99 / 5e-25 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.003G054800 [exp] 66 / 2e-13 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 60 / 3e-11 AT1G52320 615 / 0.0 unknown protein Potri.018G036400 [exp] 58 / 1e-10 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 55 / 1e-09 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 55 / 1e-09 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G197700 [exp] 54 / 3e-09 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 54 / 5e-09 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G159000 [exp] 54 / 5e-09 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10041885 pacid=23146737 polypeptide=Lus10041885 locus=Lus10041885.g ID=Lus10041885.BGIv1.0 annot-version=v1.0 ATGGGTTGCTTCTACTCGAGGATTGAGAGGGAGGAAATGGTGTCCAGATGCAAAGCCAGGAAGAAATACATGAAGCAGCTCGTTGAAGCTCGCCAATTCA TGGCGAGTTCCCATGTAATGTACCTTCGTTCACTCCGCAGCACTGGATCAGCTCTAATCCACTTTTCTAACATCGAAACCAGCCTCCACCACCACCAGTT GCAGAGCCGCCGGAATTACACTCACAACCACCATCACCACCTCCCGCCGGCGATGCCCTCTCCGTCGCCGGGTCTTCCGCCAGTTCCTCCTCCTCCTCCG CCGATGAGCCCCAGCTCTGATACCACCTGGACGTCAATCTCCGCCTCCCCTCTTCCCGGTCAGTGGGTTGACGACGGCGAGCGGCGGAAGCGGGAGTGA
AA sequence Show only first row Show all	>Lus10041885 pacid=23146737 polypeptide=Lus10041885 locus=Lus10041885.g ID=Lus10041885.BGIv1.0 annot-version=v1.0 MGCFYSRIEREEMVSRCKARKKYMKQLVEARQFMASSHVMYLRSLRSTGSALIHFSNIETSLHHHQLQSRRNYTHNHHHHLPPAMPSPSPGLPPVPPPPP PMSPSSDTTWTSISASPLPGQWVDDGERRKRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	1.4	0.9568
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	3.5	0.9506
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	3.6	0.9618
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	4.5	0.9512
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	6.0	0.9466
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	6.6	0.9450
AT4G17000			unknown protein		Lus10035651 [exp]	8.9	0.9547
AT3G22760	CPP	SOL1	Tesmin/TSO1-like CXC domain-co...		Lus10039358 [exp]	9.5	0.9459
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	9.9	0.9557
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	12.0	0.9407

Compare expression of checked genes

Lus10041885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.