Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51260 425 / 8e-153 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT5G66140 425 / 1e-152 PAD2 proteasome alpha subunit D2 (.1) AT3G22110 168 / 1e-51 PAC1 20S proteasome alpha subunit C1 (.1) AT1G53850 160 / 1e-48 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G14290 159 / 3e-48 PAE2 20S proteasome alpha subunit E2 (.1) AT1G16470 158 / 7e-48 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 157 / 2e-47 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G35590 144 / 3e-42 PAA1 proteasome alpha subunit A1 (.1) AT2G05840 140 / 3e-41 PAA2 20S proteasome subunit PAA2 (.1.2) AT1G47250 132 / 2e-37 PAF2 20S proteasome alpha subunit F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028437 [exp] 426 / 4e-153 AT5G66140 417 / 8e-150 proteasome alpha subunit D2 (.1) Lus10042145 [exp] 167 / 3e-51 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 159 / 7e-49 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10017135 [exp] 160 / 2e-48 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 159 / 3e-48 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10018318 [exp] 158 / 4e-44 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037454 [exp] 156 / 5e-44 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 156 / 8e-44 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10027669 [exp] 143 / 1e-41 AT2G05840 473 / 1e-171 20S proteasome subunit PAA2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133800 [exp] 417 / 1e-149 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.004G174200 [exp] 415 / 1e-148 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.006G008800 [exp] 171 / 1e-52 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.016G015400 [exp] 168 / 1e-51 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.012G123550 [exp] 166 / 8e-51 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 166 / 8e-51 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.001G162900 [exp] 158 / 9e-48 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.003G072500 [exp] 154 / 2e-46 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.016G139600 [exp] 141 / 4e-41 AT2G05840 459 / 2e-166 20S proteasome subunit PAA2 (.1.2) Potri.006G110800 [exp] 140 / 8e-41 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10041890 pacid=23146892 polypeptide=Lus10041890 locus=Lus10041890.g ID=Lus10041890.BGIv1.0 annot-version=v1.0 ATGGCGAGATACGATAGAGCTATCACGGTCTTTTCTCCCGATGGCCACCTCTTCCAAGTCGAGTACGCGTTGGAAGCCGTCCGTAAGGGGAACGCCGCCG TCGGCGTCCGTGGCACCGACACCGTTGTCCTCGGAGTCGAGAAGAAATCCGCGGTCAAGCTTCAGGACTCTAGGTCAGTGAGGAAGATTGTTAACCTGGA CAATCATATCGCTTTAGCATGTGCTGGACTTAAGGCAGATGCTCGCGTGCTAATCAACAAGGCCAGGATCGAATGTCAAAGCCACAGGCTTACTGTCGAG GATCCTGTGACTGTGGAGTACATCACCCGTTACATTGCAGGACTCCAGCAAAAGTACACACAGAGTGGTGGTGTCAGACCATTTGGGCTTTCAACCTTGA TAATCGGGTTTGATCCGTATACTAAGGTGCCATCTCTTTATCAGACGGATCCTTCTGGGACTTTTTCTGCTTGGAAGGCTAATGCAACTGGGAGAAACTC CAACTCCATCAGAGAGTTTCTTGAGAAGAACTATAAAGAAACCTCTGGACAAGAAACTGTTAAGCTTGCCATCCGTGCCTTACTGGAGGTTGTGGAGAGC GGAGGAAAGAACATTGAAGTTGCAGTGATGACGAAAGAACACGGCCTGAAGCAACTCGAAGAGGCTGAAATTGATGCTATCGTGGCTGAGATCGAAGCAG AGAAGGCAGCTGCCGAGGCTGCCAAGAAGGCCCCTGCTAGAGACGCCTGA
AA sequence Show only first row Show all	>Lus10041890 pacid=23146892 polypeptide=Lus10041890 locus=Lus10041890.g ID=Lus10041890.BGIv1.0 annot-version=v1.0 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSAVKLQDSRSVRKIVNLDNHIALACAGLKADARVLINKARIECQSHRLTVE DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPYTKVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVES GGKNIEVAVMTKEHGLKQLEEAEIDAIVAEIEAEKAAAEAAKKAPARDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10041890 [exp]	0	1
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10028437 [exp]	1.0	0.8280
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	3.9	0.7816
AT3G58110			unknown protein		Lus10002186 [exp]	6.0	0.7734
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	7.1	0.8190
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	7.1	0.7306
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10005038 [exp]	10.4	0.7448
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	12.2	0.7554
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	17.3	0.7533
AT3G07640			unknown protein		Lus10036423 [exp]	19.9	0.7112
AT1G50660			unknown protein		Lus10043111 [exp]	21.7	0.7680

Compare expression of checked genes

Lus10041890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.