Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17820 1469 / 0 AHK1, ATHK1 histidine kinase 1 (.1) AT2G47430 217 / 2e-57 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT1G27320 122 / 5e-28 AHK3 histidine kinase 3 (.1) AT2G01830 119 / 7e-27 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 110 / 5e-24 AHK2 histidine kinase 2 (.1) AT1G66340 94 / 4e-19 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT5G10720 85 / 2e-16 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G40940 82 / 1e-15 ERS1 ethylene response sensor 1 (.1) AT3G04580 74 / 5e-13 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 56 / 2e-07 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028438 [exp] 2116 / 0 AT2G17820 1553 / 0.0 histidine kinase 1 (.1) Lus10037032 [exp] 131 / 1e-30 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10015773 [exp] 129 / 6e-30 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10013250 [exp] 126 / 5e-29 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 124 / 2e-28 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 122 / 6e-28 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10029849 [exp] 122 / 9e-28 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10030772 [exp] 121 / 2e-27 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10012325 [exp] 120 / 4e-27 AT5G35750 1278 / 0.0 histidine kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111700 [exp] 1450 / 0 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.007G056400 [exp] 1449 / 0 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.013G009700 [exp] 211 / 1e-55 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.014G121500 [exp] 157 / 1e-38 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.008G191100 [exp] 155 / 3e-38 AT2G47430 746 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.001G057400 [exp] 134 / 2e-31 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.003G171000 [exp] 127 / 2e-29 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.008G137900 [exp] 127 / 3e-29 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 122 / 7e-28 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 119 / 7e-27 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10041891 pacid=23146763 polypeptide=Lus10041891 locus=Lus10041891.g ID=Lus10041891.BGIv1.0 annot-version=v1.0 ATGGATCAAGAGAGAAGAACCAACTCCACTGCCGTAATTGCTTCAGAATGTTCTTCACCATTCAGTCCATCCATGGCTTCTCCTTTCGCTAGGTTTCTTG ACGTGATTGGAAGCTTCCCCACTTGGCCATGGGGGAGATCAAACAACTCATCCCATCAAGGTTCAGGAAGAGGAAGAAGAAGAAGAGTGTTCCATAGGGA TGTTGAAGAGGACGAGTTTCACTCAGCAACTGCTGCTCACTGTCTCTCTTCTTATTACAGTGTTTTCGTCGTTCGCCTTGCCATCATGGTGATGCTAGCA ATTCTGATAGGTCTGTTGACCGTGTTAACCTGGCATTTCACAAGGAGCTACACCAAGAAGTCACTTGACACTTTAGCTTCTGGTCTTAGATATGAGCTAC TACAGCGGCCCATATTAAGGATGTGGAACATTCTAAACTCCACTTCTGAGATTACCACAGCTCAAGTTAAGCTATCTGAGTATGTCTTAAGACGCTACAG CAAACCAGAAACGCAGGCTGAACAAGTTGAGCTGTATGAAATGATGAGAGATGTGACTTGGGCACTGTTTGTGAGCAGAAAGGCACTGAATGCAATAACC ATAAACTACAGAAACGGCTTTGTTCAGGCTTTCCATAGAGACCACATAACCAACAACACATTCTACATCTACTCCGACCTTGTCAACTACTCCATCAGCT CCTACGGTGTCGACAAATCCCTCTCAGCTCATCGAGGATGGGACACCGAGTCGATTCACAACAACTTCTCTGCGATTTGGTATCGCGAGCCACTCGATCC TCTCACGGGGGAGAAGCTAGGGAAAGCGCAGCCTATCCTGCCTGATGACCTCATCAACATTGCGGGTCTATCGCAGGTGCCAGATGGTGTGGCATCGTGG CATGTGGCGGTGACCAAATATGCTGACTCACCAATGCTTTCCGCTGCATTGCCTGTTTGGGATGCTTCGAACAAGAGCATCATTGCAGTTGTGGGTGTCA CAACTGCACTTTACAGCGTTGGCCAGCTGATGAGAGAGCTTGTTGAAGTTCATAGCGGTCATATGATTTATTTAACCTCTCAAGAAGGCTATTTGCTTGC TACTTCCACAAATGCTCCTCTTTTAACAAATTCATCATCGTCGTCGGGGCCTAACCTTATGATGGCTGTTGACTCTCAAGATCCTATTATAAGGATGGGA GCTCAATGCTTGGATAGAATCTATGGGAACAACTTCCCATCTGGCCATGTAGTTCATGTTGAAAACGCGAAGCTTGGCCGGCAAGAATACTATATTGATT CTTTCTTTCTCAATCTGAAAAAACTCCCCATAGTTGGGGTTATAATCATTCCAAGAAGATACATAATGGGAAAGGTGGATGAGAGAGCCTTCAAGACATT GGTTATACTGATTTCTGCCTCTTTATGCATTCTGGTCACTGGATGTGTCTTCATCTTGATTCTCACTAATGGAGTTTCTAAGGAAATGAAACTGAGAGCT GAACTTATTAGCCATCTCGATGCCAGACGAAGGGCTGAAGCATCAAACAACTATAAAACCCAGTTTCTGGCAAACATGAGTCATGAATTGAGGACTCCTA TGGCTGCAGTAATTGGACTACTGGACATTCTCATCTCTGATGATTGTCTCACAAATGAACAGTACTCAACTGTAACCCAAATCAGAAAATGCTCCACAGC TTTGCTCCGCCTTCTGAACAATATATTGGATCTCAGTAAGGTTGAATCTGGTAAGCTGGTCTTGGAAGATGCTGAGTTTGATTTGTGCAGAGAACTTGAA GGACTGATTGATATGTTCTCAGTACAGTGTATTAGCCATAACGTGGAGGCTGTTTTAGATATTTCTGATGACATGCCAAAACTAGTAAGTGGAGACTCTG CGAGGGTGGTTCAGATATTTGCCAATCTGATCAGCAATTCCATCAAGTTTACAACATCGGGTCACATAATCCTGAGAGGCTGGTGTGAAAACTTGAATAG CTTTGATTATGCTGAAATGTTCCCTGCTGAGAATAAGAAAATGAGATGTGCAATCAAGGCAAAGTTGAGGCAACATGGGAACCACATGAAGAAAGCTAGT AAGAAGGAGAACAAAGTGATCCTATGGTTTGAAGTTGATGATACAGGCTGCGGAATTGATCCAAGCAAATGGGAGTCTGTATTTGAGAGCTTTGAGCAAG CTGATCCGTCTACGACGCGACTGCACGGTGGCACTGGCCTTGGATTATGCATTGTCCGAACCTTGGTCCAGAAAATGGGTGGAGAGATAAAAGTTGTGAA GAAGAATGGACCAGGAACTCTAATGAGACTGTTCTTGCTTTTAAGTGCACCTGCAGATATCACAGAACAACATTTGCAAGTGGATTTCGCTAGGCATAAT TTGGTGATCTTGCTTGCACTCCACGGCACAATGGGAAGAGTTGTTACGTCGAAATGGCTACAGAAAATAGGACTGTCTACAGTAGGAGTATCCGAATGGA ACGAATTGACCCAAGTCCTCCGAGAACTCTTCCAATCAAGAACGCGAAACAACACCAATAATAAAAACCCCTTTGACACTCACCACCCTCTGAAGGAGGC GGTGAAATCAGAACTCCTGAACATCAAAGACATAAAGGAAGCCTTACTCGTCATAGTTGTGGACATCGGACTTCTTGACTTAAGCACAGAGATATGGAAA GAGCAGCTAAACTTCCTGGAAAAATTCTCAGGCAAAGCCAAGTTCGCTTGGATGCTAAACCACGACACTTCCAACGCAGTAAAGATGGAACTTCGCTGCA AAGGGCATATGTTAATGGTCAACAAGCCTCTCTACAAGGCCAAAATGGTTCAAATCATGGAAGCCATTATGAAAGATCACAACTTTGACCAGCAGAAGGC CCGGAGGCACGAATTTCAGGAGATTGATGCGACTGATCAGTTCGAAACCGCCAGCTGCTCCGAGGATTCCGATGAACTTGTTCTTCCAACAACAACAACT TCATCTCAGTATAACCAGAAGTGCTTAGTCGAAATGACCGATGTGCACTCGGAGGGTCGTAGTTCCAGCAGAAGGGAAGGCAGTAATTCGGAGGGAATCA CTGCCAATAAGCAGACAAAATCACTTGATGGGTTGAGGATTCTGCTAGCGGAAGACACTCCAGTTCTGCAAAGAGTTGCTACCATTATGCTGGAGAAAAT GGGGGCTACTGTTATAGCAGTAGGAGATGGAGTTCAAGCAGTGGATGCTCTGAACAGCGTTGTTGATGGCACTGCTAGCACAGATGATCATGAGATTCAG AGAACTCCTCAGCTGTTTGATCTTGTGTTGATGGATTGTCAGATGCCGAAGATGGACGGTTACGAAGCAACCAAGGAGATTAGGAGAAGTGAAGAAGGGA GAGGGGTGCATATTCCGATAGTGGCGTTGACGGCACACGCAATGTCGTGTGATGAAGCTAAGTGCTTGGCAGTTGGGATGGATGCGTATCTGACGAAGCC GATTGATTATAAGCTTATGGTTTCCACCATTTTGTCACTTACTAGACCTGCAGCGACTGAGTAA
AA sequence Show only first row Show all	>Lus10041891 pacid=23146763 polypeptide=Lus10041891 locus=Lus10041891.g ID=Lus10041891.BGIv1.0 annot-version=v1.0 MDQERRTNSTAVIASECSSPFSPSMASPFARFLDVIGSFPTWPWGRSNNSSHQGSGRGRRRRVFHRDVEEDEFHSATAAHCLSSYYSVFVVRLAIMVMLA ILIGLLTVLTWHFTRSYTKKSLDTLASGLRYELLQRPILRMWNILNSTSEITTAQVKLSEYVLRRYSKPETQAEQVELYEMMRDVTWALFVSRKALNAIT INYRNGFVQAFHRDHITNNTFYIYSDLVNYSISSYGVDKSLSAHRGWDTESIHNNFSAIWYREPLDPLTGEKLGKAQPILPDDLINIAGLSQVPDGVASW HVAVTKYADSPMLSAALPVWDASNKSIIAVVGVTTALYSVGQLMRELVEVHSGHMIYLTSQEGYLLATSTNAPLLTNSSSSSGPNLMMAVDSQDPIIRMG AQCLDRIYGNNFPSGHVVHVENAKLGRQEYYIDSFFLNLKKLPIVGVIIIPRRYIMGKVDERAFKTLVILISASLCILVTGCVFILILTNGVSKEMKLRA ELISHLDARRRAEASNNYKTQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLCRELE GLIDMFSVQCISHNVEAVLDISDDMPKLVSGDSARVVQIFANLISNSIKFTTSGHIILRGWCENLNSFDYAEMFPAENKKMRCAIKAKLRQHGNHMKKAS KKENKVILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVQKMGGEIKVVKKNGPGTLMRLFLLLSAPADITEQHLQVDFARHN LVILLALHGTMGRVVTSKWLQKIGLSTVGVSEWNELTQVLRELFQSRTRNNTNNKNPFDTHHPLKEAVKSELLNIKDIKEALLVIVVDIGLLDLSTEIWK EQLNFLEKFSGKAKFAWMLNHDTSNAVKMELRCKGHMLMVNKPLYKAKMVQIMEAIMKDHNFDQQKARRHEFQEIDATDQFETASCSEDSDELVLPTTTT SSQYNQKCLVEMTDVHSEGRSSSRREGSNSEGITANKQTKSLDGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGVQAVDALNSVVDGTASTDDHEIQ RTPQLFDLVLMDCQMPKMDGYEATKEIRRSEEGRGVHIPIVALTAHAMSCDEAKCLAVGMDAYLTKPIDYKLMVSTILSLTRPAATE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10041891 [exp]	0	1
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028221 [exp]	3.5	0.8897
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005964 [exp]	10.8	0.8315
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10036823 [exp]	22.9	0.8812
AT1G11050			Protein kinase superfamily pro...		Lus10028551 [exp]	55.9	0.8479
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	59.0	0.8502
					Lus10025897 [exp]	93.3	0.8170
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10040861 [exp]	96.7	0.8292
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042918 [exp]	102.6	0.7783
AT3G19200			unknown protein		Lus10014046 [exp]	104.3	0.8104
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	110.6	0.8017

Compare expression of checked genes

Lus10041891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.