Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51250 345 / 2e-116 Senescence/dehydration-associated protein-related (.1) AT2G17840 315 / 4e-105 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT4G35985 310 / 4e-103 Senescence/dehydration-associated protein-related (.1) AT4G15450 135 / 2e-36 Senescence/dehydration-associated protein-related (.1) AT3G21600 134 / 4e-36 Senescence/dehydration-associated protein-related (.1.2) AT3G21590 45 / 2e-05 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028439 [exp] 541 / 0 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 301 / 2e-97 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 290 / 2e-95 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 235 / 7e-74 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 170 / 2e-51 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 122 / 2e-31 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 118 / 3e-30 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 115 / 2e-29 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10034498 [exp] 80 / 3e-18 AT3G51250 97 / 9e-25 Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111600 [exp] 358 / 1e-121 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 317 / 6e-106 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 299 / 4e-99 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 127 / 2e-33 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 107 / 2e-26 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Lus10041892 pacid=23146971 polypeptide=Lus10041892 locus=Lus10041892.g ID=Lus10041892.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGGAATTGCTTATCAGAATCCCCGGCGCAATCCTGAACCTCGTGGATAAAACCTACAGCGTGGAGCTCGCATCCGGCGATCTATCTGTCA TCCTCCTCCGTCAAGGCAACAGCATTGTCGCGGTTCTGGCTCGCGTGGGGAATGAGATTCAATGGCCGTTGGGGAAAGAAGGAGCCGCTGTTAAGCTCGG CGAGTCACATTATTTTTTCACCCTTCGATTGCCGCAGGAGCAGGGGTCGGATTCGAGTGATAATAAGAAGGATAAGAAAACAGGAAAGAATGAACAGGAG GAAATGTTGAATTACGGATTGACGATTGCATCAAAGGGGCAGGAAGGGGTTTTGAAGGAGCTAGATGAGATATTCAAGACGTACTGTTGTTTCTCGGTCC AAAAGGTGTCGGAGAAGGCGAATGAGTCGATGGAGAATGAGATTTCGCCTAAAGATTTGGAGTCGGTGGAGAAGAAGGCGATGGTGGAAGGGAATTACGC GACCTACTGGACGATGTTGAAGAAGGGAAATGAGGCAATGAAGCAGAGGATGAGTCCCAAATCGAATGCTGAGGTCAGTCCAGAAACCATGGAAGGATTA GAAGGTGGTGATGCTGAGTTTCATTGCAGGGTTAAGCGGATGACTGAATTGACTGAGAAAGTAACAAACGGGGTGCTCTCTGGTGTGGTTAAAGTAACAG GACTTTTCACAAGCCCAGTCTCTAACTCCAAGATGGGCAAGAAAGTTTTTGGCCTTCTGCCTGGTGAAATTGTTCTTGCGTCTTTGGATGGATTCAGCAG GGTGTGTGATGCTGTTGAAGTAGCTGGAAGGAATGTGATGTCAACATCATCAGATGTTGTTTCCCACAGATATAGCGAAGAAGCAGGGCATGCGTTTGGG GTTGCTTGGGCTGCTCTTAAAATTAGGAAGGCTCTTAACCCCAAAAGTGCTCTGAAGCCCACCAAGCTGGCCAAGTCTGTTAAAATTGCAGCTGAAGAAG TGAAGGCCTAA
AA sequence Show only first row Show all	>Lus10041892 pacid=23146971 polypeptide=Lus10041892 locus=Lus10041892.g ID=Lus10041892.BGIv1.0 annot-version=v1.0 MATEELLIRIPGAILNLVDKTYSVELASGDLSVILLRQGNSIVAVLARVGNEIQWPLGKEGAAVKLGESHYFFTLRLPQEQGSDSSDNKKDKKTGKNEQE EMLNYGLTIASKGQEGVLKELDEIFKTYCCFSVQKVSEKANESMENEISPKDLESVEKKAMVEGNYATYWTMLKKGNEAMKQRMSPKSNAEVSPETMEGL EGGDAEFHCRVKRMTELTEKVTNGVLSGVVKVTGLFTSPVSNSKMGKKVFGLLPGEIVLASLDGFSRVCDAVEVAGRNVMSTSSDVVSHRYSEEAGHAFG VAWAALKIRKALNPKSALKPTKLAKSVKIAAEEVKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51250			Senescence/dehydration-associa...		Lus10041892 [exp]	0	1
AT1G28760			Uncharacterized conserved prot...		Lus10034420 [exp]	1.7	0.8018
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	3.5	0.7785
					Lus10010102 [exp]	7.5	0.7890
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	10.4	0.7651
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	16.5	0.7191
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	18.5	0.7584
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	19.7	0.7434
					Lus10024691 [exp]	21.2	0.7316
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	25.3	0.7770
					Lus10006808 [exp]	26.1	0.7386

Compare expression of checked genes

Lus10041892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.