Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66170 116 / 2e-33 STR18 sulfurtransferase 18 (.1.2.3) AT2G17850 103 / 4e-28 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G21045 99 / 4e-26 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66040 88 / 2e-22 STR16 sulfurtransferase protein 16 (.1.2) AT4G35770 86 / 4e-21 ATSEN1, DIN1, SEN1 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) AT4G27700 46 / 4e-06 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G42220 41 / 0.0002 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028442 [exp] 330 / 1e-116 AT5G66170 119 / 2e-34 sulfurtransferase 18 (.1.2.3) Lus10041894 [exp] 159 / 1e-49 AT5G66170 120 / 1e-35 sulfurtransferase 18 (.1.2.3) Lus10028441 [exp] 117 / 9e-34 AT5G66170 89 / 9e-24 sulfurtransferase 18 (.1.2.3) Lus10028390 [exp] 95 / 2e-24 AT4G35770 182 / 3e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10041843 [exp] 91 / 6e-23 AT4G35770 182 / 6e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10012566 [exp] 84 / 1e-20 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10005635 [exp] 82 / 2e-19 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10041525 [exp] 77 / 1e-16 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10023820 [exp] 42 / 0.0001 AT2G42220 302 / 1e-104 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111200 [exp] 139 / 5e-42 AT2G17850 162 / 5e-52 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 116 / 3e-33 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.002G014900 [exp] 94 / 3e-24 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.005G106400 [exp] 90 / 6e-22 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.006G059200 [exp] 43 / 7e-05 AT2G42220 318 / 4e-111 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G086100 [exp] 42 / 9e-05 AT4G24750 416 / 1e-147 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G100600 [exp] 41 / 0.0002 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10041895 pacid=23146703 polypeptide=Lus10041895 locus=Lus10041895.g ID=Lus10041895.BGIv1.0 annot-version=v1.0 ATGGCTACAGTTTCTCTTCTCCGATGGAATTTCTTGTTGTTGTTGTTGTTGCTTTCGGTTTCCCGTTGGGTTTGCTACAGTTCTGGAGCTGAAGTAACCA CCGTTGATGTTCATAAGGCCAAGTCTCTTCTCCAGTCCGGCCATGTCTATCTTGATGTCAGGACAGAGGAGGAGTTCAAAGCAGCGCATCCTGACGCGGA GACGATATGGAAACTGAGAGGACAACCTGAGAAAGAAACTGATGATGATGTCACAAAGAAGAAGAAGATCATATACAATATTCCTTACATGTTCAACACG TCTCAGGGTCCTCGTTTCCGCTTCTGTCTGATTCATTTGATGCGATGCGCCCTCGAACAGTACTTCTCACATGAGAATGATGTTTCTTCAGGCCGAGTGA AGAATCCAGAGTTCGTGGCAAAGGTCAAGGAGATACTCAAGGAAGATGACCGTCTCGTCGTGGGATGTCAGAGTGGAGCGAGGTCTCTATCTGCAACTGC TGATCTTCTTAGTGCAGGCTTCAAACAGGCTTGCAATATGGGTGGAGGGTACCAAGCGTGGGAGAAGAATGGGTTTCAAGTGAAGAAACAACTGAAGCAA GAAGAACTCTGA
AA sequence Show only first row Show all	>Lus10041895 pacid=23146703 polypeptide=Lus10041895 locus=Lus10041895.g ID=Lus10041895.BGIv1.0 annot-version=v1.0 MATVSLLRWNFLLLLLLLSVSRWVCYSSGAEVTTVDVHKAKSLLQSGHVYLDVRTEEEFKAAHPDAETIWKLRGQPEKETDDDVTKKKKIIYNIPYMFNT SQGPRFRFCLIHLMRCALEQYFSHENDVSSGRVKNPEFVAKVKEILKEDDRLVVGCQSGARSLSATADLLSAGFKQACNMGGGYQAWEKNGFQVKKQLKQ EEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041895 [exp]	0	1
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028442 [exp]	1.7	0.9128
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	2.8	0.9080
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10000600 [exp]	3.2	0.9165
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10014273 [exp]	7.7	0.8788
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	10.4	0.9170
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041894 [exp]	16.5	0.8854
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	22.1	0.8941
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Lus10038306 [exp]	26.4	0.8693
AT4G03420			Protein of unknown function (D...		Lus10018572 [exp]	30.5	0.8693
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	35.5	0.8441

Compare expression of checked genes

Lus10041895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.