Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66160 251 / 2e-82 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT1G71980 191 / 4e-57 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 172 / 4e-50 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35630 169 / 4e-50 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 159 / 5e-45 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35625 99 / 2e-24 RING/U-box superfamily protein (.1) AT3G19910 68 / 1e-12 RING/U-box superfamily protein (.1) AT2G27940 66 / 2e-12 RING/U-box superfamily protein (.1) AT5G27420 66 / 5e-12 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT4G09100 62 / 8e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028443 [exp] 498 / 7e-179 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10006074 [exp] 186 / 3e-55 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 177 / 8e-52 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10014823 [exp] 177 / 3e-50 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 109 / 1e-26 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10000053 [exp] 88 / 5e-21 AT1G71980 137 / 3e-39 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10012975 [exp] 67 / 6e-12 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10011702 [exp] 66 / 6e-12 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10009511 [exp] 66 / 1e-11 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111100 [exp] 349 / 9e-121 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.019G082500 [exp] 186 / 2e-55 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.013G111500 [exp] 186 / 5e-55 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.005G090800 [exp] 70 / 3e-13 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.001G127100 [exp] 69 / 8e-13 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 68 / 2e-12 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.018G085001 [exp] 67 / 4e-12 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.007G073200 [exp] 66 / 8e-12 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 65 / 2e-11 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 63 / 4e-11 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10041896 pacid=23146987 polypeptide=Lus10041896 locus=Lus10041896.g ID=Lus10041896.BGIv1.0 annot-version=v1.0 ATGGTGGTGTTGAAACCCTTCTTCATGTCATTTCCCGACCTTCCCGCCAAATTCGCGGCTGGAGTGAATTTCTCTGGGGTATGTGGAGCTCTACACGTGG CGAATCCTCTGGAAGCTTGTTCTTCGCTCCAGGGGCGTATAGGGTTCAACAGAACTGAGAGAGCGAGCTTCGCACTGATTGTGAGGGGCGGATGTGCGTT CGAGGAGAAAATTCGGAATGCTCAACTCGCTGGGTTTCGAGCTGCGATTGTGTTTGATGATCGGGATAAGCGAAATTTGGTGTACATGATGGTGAACCCG GACAATGTGAAGATACATGCGGTTTTTGTCTCGAAGGCTACCGGTGAGATTCTGATGGAGCATGCAAGTGGGGAAGAAGCGGAATGCTGCATCTACCCAT CGCAGAATGACACAGCTTGGACGGTTTTGGCAATATCGTTTCTGTCACTAGTTGTCGTCCTGATTTTTCTTGTGATTGCCCTTGTCACGCCTCGCCACTG GGTGCATTGGCGGCGATTCAATTTCCATCACAGGAGTGTGGATGCTAAAACGGTGGAGACGCTACCTTGCTTCACTTTTCATTCTGCACATTTGAGGCAG AGCCATTGTGGAGAAACTTGTGTGATTTGCCTCGAGGATTATAAAGACGGTGAAGTTCTCAAAGTTCTTCCTTGCAAACACGAGTTTCATTCGAGCTGTG TTGGTTCATGGCTTACTAAGTGGGGGACATTTTGCCCAGTGTGCAAGCTAGACATGAGAAATGACTTCACTTATTCTGAGGAAAACTTGATTGGTGAATC GTCACTTAAAAGCTCTTTGTATCCTCCCTGCAGATCAAGAGGGGAATTTGGTCTCAGAACCGGTGAACTTACTGTCCGAGTTCAGCAACCTTGTAATCTA AGGTATCCTAAACAAAATCCTCATAAATATACCATAAGTGGCTCGTTAGCCTGTTTTCTCCGATTGGAATATAGACTCATGCAGCATACTGCTGCATCAT AA
AA sequence Show only first row Show all	>Lus10041896 pacid=23146987 polypeptide=Lus10041896 locus=Lus10041896.g ID=Lus10041896.BGIv1.0 annot-version=v1.0 MVVLKPFFMSFPDLPAKFAAGVNFSGVCGALHVANPLEACSSLQGRIGFNRTERASFALIVRGGCAFEEKIRNAQLAGFRAAIVFDDRDKRNLVYMMVNP DNVKIHAVFVSKATGEILMEHASGEEAECCIYPSQNDTAWTVLAISFLSLVVVLIFLVIALVTPRHWVHWRRFNFHHRSVDAKTVETLPCFTFHSAHLRQ SHCGETCVICLEDYKDGEVLKVLPCKHEFHSSCVGSWLTKWGTFCPVCKLDMRNDFTYSEENLIGESSLKSSLYPPCRSRGEFGLRTGELTVRVQQPCNL RYPKQNPHKYTISGSLACFLRLEYRLMQHTAAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Lus10041896 [exp]	0	1
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Lus10028443 [exp]	1.4	0.8524
AT1G14740			Protein of unknown function (D...		Lus10030770 [exp]	2.2	0.8528
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10001544 [exp]	11.7	0.8355
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	14.3	0.8350
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	25.5	0.8172
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	28.3	0.8171
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	37.1	0.8273
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	40.8	0.8124
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	52.3	0.8086
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	60.5	0.8123

Compare expression of checked genes

Lus10041896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.