Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10770 1043 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 932 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 921 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 910 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT1G09930 824 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 814 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G26590 771 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 761 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G16370 755 / 0 ATOPT3 oligopeptide transporter (.1) AT5G66180 379 / 4e-121 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028445 [exp] 1147 / 0 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10006581 [exp] 1041 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 976 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10007770 [exp] 845 / 0 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10022543 [exp] 799 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 780 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 771 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10039075 [exp] 767 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10038784 [exp] 764 / 0 AT4G16370 1302 / 0.0 oligopeptide transporter (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056900 [exp] 1197 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.003G145500 [exp] 1095 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 959 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 949 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.009G079500 [exp] 820 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 819 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.005G150400 [exp] 809 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.016G004800 [exp] 798 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 771 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 763 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10041897 pacid=23146992 polypeptide=Lus10041897 locus=Lus10041897.g ID=Lus10041897.BGIv1.0 annot-version=v1.0 ATGGCAGAACCGCCGGAGCTTCCTTTGCCGGAAGCTTTTCTTGCTTTCCTTCAAGCGAACGGGATTGACCCCGCTATATATACTGCAAGCGATTTGATTC CTCGATACATAAGATTGAAGCCTGGGATTGAACTGCTTCTTGAAGAGATTGAAGCTGAGATGATGTGTCAGCTTGAGAGAGTTGGGGGGTTGCCTGGGTT CTATTTGTTTCGGCAGGTTTTAGCTTCTGTGGCTTTTTATTTCCTGACGTTTGAAAACAATTACTTGCGAAGATTGAAGCCTGGGAATGAACTGATTCTT GAAGATATTGAGGCTGAGATGAAGTGTCAGCTTGAGAGAGTTGGGTGGTTACCTGGTTTCTATTCGCTTCCTCCGCAAATTCAGATTGCCAGCTCAAAAG CATACAAAGAGGGAAAGATTTATGGAGTCGATGCAGCATCTGGAGCTGCTGTTATGGCATTGAATGTGTCAGTGGGAGATCATGTTCTTGACCTTTGTGC TGCTCCTGGTGCTAAACTTTGTATGATATTGGACCTTCTTGGTGATTCTGGATCCGTAACTGGTGTTGATGTTGCAAGCCACCGGCTTGCTGCTTGTAGA ACTTTGCTTCAGAAGTATGGAATTGGTGATAGGTGCCGGCTTTTCGTCGCAGACGGGACGAAGTTTTCACTCATTCCTGTGAAGGGTTGTTGGGATTTTT CATCATGTCAATCAGAAGCGGAAGCAGATGATATATTCAAAGAGTGGACTTCTAGAAGACCATGGAAAGAGAGGAAAAGAGCAGCTAAAGCAAGGAAATG TTCTTCTGTGGAAGTAATTGCAGAAAGTAGTCCTCCTGAACTTATCTTCTATGGGCGGAATTCTGGAGTAATTGGGTTGAGGAAAAGTGAATTGTATCAA CCTGTATCCGATGGTGTAGTTTCAAGCGGTGGCTATGACAAGGTCCTTGTGGATGCAGAGTGCACTCATGATGGCTCAGTTAAACATATCCAGAAGTTTG AACAATGGGGTTGGGAAACCCTTAACCAACGTGTGTTGAATGCTGAGAGAACTGATGACCTGACCACTCTTCAGTTGAACCTCCTGAGAAATGGTTTCAG GTTACTGAAAATCGGCGGCTCTCTTGTCTACAGTACTTGCAGTTTAACAGTTTCACAGAATGAAGAAGTGATAGGGAAATTTCTTGAAGAGAATACATCT GCTGTGGGCGAATCCGCCTCCACCTCCGGTCATATCTCCGACGACGATGAACCGGAGGAGAACTCTCCCATCGAGCAGGTGGCTCTCACAGTTCCGGCAA CCGACGACCCGTCCGTCCCAGCCATTACTTTCCGAACATGGACCCTCGGCGCAGTCGCCTGCCTCCTCTTATCATTCCTCAACCAGTTCTTCTGGTACCG GAAGGAGGCGCCCTCAATCACTGCCATCTCCGCTCAGATCGCGGTGGTTCCCCTCGGCCACCTGATGGCGTACTCCATCACAGACAGAGTGTTCTTCAGA GGGACTAGATTCCAGTTCACGATGAATCCGGGTCCTTTCAATGTGAAGGAGCACGTTCTCATCACGATCTTCGCCAACTCCGGCGCCGGAAATCCTTACG CGATTCACATCGTCAGCGCCGTCAAGCTGTTCTACAAAAAGGAGTTGACTTTCTTTGTGGCGCTTCTGGTGGTATTGACTACTCAGGTGCTTGGATTCGG CTGGGCTGGAATCTTCCGACGGTACCTGGTGGAGCCGGCTGCCATGTGGTGGCCTCAGAACCTCGTCCAAGTTTCTCTCTTCCGGGCACTACATGAGAAA GAGGAAAGGAGGAAAGGTGGAGTAACAAGGAATCAGTTTTTCATCATTGCATTCATTTGCAGCTTTGGTTACTATGTGTTCCCTGATTACCTCTTCTCCA AGTTATCTTCCTTCTCCTGGGTTTGCTGGGTGTTCCCTGCTTCGATTCTAGTTCACCAGCTTGGTTCAGGTTACCACGGACTTGGGATCGGTGCTTTAGG CTTCGATTGGGCTACCATTTCTGCTTACCTAGGGAGTCCATTGGCAAGCCCTTGGTTCGCCACTGCAAATGTCGCTGTGGGATTTGGTATGTTTATGTAT GTCATCAATCCTCTTGCGTATTGGCTCGACGTTTACAGGGCCAAGACGTTCCCGATTTTCTCGGATGGCTTGTTCCAAGCTGACGGTCAAGAGTACAATA TCTCTGCCATTGTTGACTCGAACTTCCACATTGACGTGGATGCTTATAACCAGCAAGGCCCTCTTTATCTCAGCACTGTTTTCGCAATGGTTTACGGGTG TAATTTCGCTTGCCTTACTGCAACTATCGTTCATGTCTTCCTTTTCCATGGACGGGATATATGGGAGTTGAGCAAGTCTGCCTTCCAGGAGAAGCAAATG GATGTGCATACAAAGCTAATGAGAAAATACAAGCAAGTTCCAGAGTGGTGGTTCTTGTTCATGCTTCTCTTGAACATTGCAGCTACTGTATTTATATGTG AGTTCTACAAAGATCAGCTCCAATTACCTTGGTGGGGTGTGCTGCTAGCCTGTGGCCTTGCTTTTTTCTTCACTCTTCCTGTCGGAATCATTACCGCCAC AACAAATCAGACTCCAGGCCTTAATGTGATAACAGAGTTCGTAATCGGGTATCTATACCCGGGGTTCCCGGTCGCTAACGTATGCTTCAAAGTGTATGGA TACATCAGCATGAAACAAGGAATCCTGTTTCTCCAAGACTTCAAACTCGGCCACTACATGAAGATCCCACCTAGAGACATGTTCATGGCCCAAGTGGTTG GTGCAGCAATAGCAGCATTTGCACACTTGGGAACAGCATGGTGGCTAATGAGCACAATTCCGAACATTTGCGACCGGTCCTTGCTTCCACCGGACAGTCC GTGGACATGTCCGGGCGACCACGTCTTCTACGACGCATCGGTTATCTGGGGCTTGATCGGTCCGCGCAGAATATTCGGAGACTTGGGGTACTACTCCGGA ATCAACTGGCTCTTCTTGGCCGGAGCGATTGCTCCGGTGTTGGTTTGGTTAGCACACAAGTGTTTCCCAAACCAGCATTGGATTAAACTTATCTCATTGC CGGTGATTTTGAGCACCACCTTGAATATGCTACCTGGCACTGCGGTGAATTACACGAGTTGGGTGCTTGTAGGGTTCGCTTCGGGGTTTGTTGCTTACAG ATACTACCGCGAGTGGTGGAGCCGTCACAACTATGTGCTGTCGGGATCGCTTGATGCTGGGTTGGCTTTCATGGCTGTACTGCTGTACTTGTGCTTGGGA ATGCAGCACATTGGACTTGAGTGGTGGGGGAATGATTCGGATGGGTGTCCATTGGCTTCTTGCCCAACTGCTCCAGGAGTTAGTGCTAAGGGGTGTCCAG TTTCCTGA
AA sequence Show only first row Show all	>Lus10041897 pacid=23146992 polypeptide=Lus10041897 locus=Lus10041897.g ID=Lus10041897.BGIv1.0 annot-version=v1.0 MAEPPELPLPEAFLAFLQANGIDPAIYTASDLIPRYIRLKPGIELLLEEIEAEMMCQLERVGGLPGFYLFRQVLASVAFYFLTFENNYLRRLKPGNELIL EDIEAEMKCQLERVGWLPGFYSLPPQIQIASSKAYKEGKIYGVDAASGAAVMALNVSVGDHVLDLCAAPGAKLCMILDLLGDSGSVTGVDVASHRLAACR TLLQKYGIGDRCRLFVADGTKFSLIPVKGCWDFSSCQSEAEADDIFKEWTSRRPWKERKRAAKARKCSSVEVIAESSPPELIFYGRNSGVIGLRKSELYQ PVSDGVVSSGGYDKVLVDAECTHDGSVKHIQKFEQWGWETLNQRVLNAERTDDLTTLQLNLLRNGFRLLKIGGSLVYSTCSLTVSQNEEVIGKFLEENTS AVGESASTSGHISDDDEPEENSPIEQVALTVPATDDPSVPAITFRTWTLGAVACLLLSFLNQFFWYRKEAPSITAISAQIAVVPLGHLMAYSITDRVFFR GTRFQFTMNPGPFNVKEHVLITIFANSGAGNPYAIHIVSAVKLFYKKELTFFVALLVVLTTQVLGFGWAGIFRRYLVEPAAMWWPQNLVQVSLFRALHEK EERRKGGVTRNQFFIIAFICSFGYYVFPDYLFSKLSSFSWVCWVFPASILVHQLGSGYHGLGIGALGFDWATISAYLGSPLASPWFATANVAVGFGMFMY VINPLAYWLDVYRAKTFPIFSDGLFQADGQEYNISAIVDSNFHIDVDAYNQQGPLYLSTVFAMVYGCNFACLTATIVHVFLFHGRDIWELSKSAFQEKQM DVHTKLMRKYKQVPEWWFLFMLLLNIAATVFICEFYKDQLQLPWWGVLLACGLAFFFTLPVGIITATTNQTPGLNVITEFVIGYLYPGFPVANVCFKVYG YISMKQGILFLQDFKLGHYMKIPPRDMFMAQVVGAAIAAFAHLGTAWWLMSTIPNICDRSLLPPDSPWTCPGDHVFYDASVIWGLIGPRRIFGDLGYYSG INWLFLAGAIAPVLVWLAHKCFPNQHWIKLISLPVILSTTLNMLPGTAVNYTSWVLVGFASGFVAYRYYREWWSRHNYVLSGSLDAGLAFMAVLLYLCLG MQHIGLEWWGNDSDGCPLASCPTAPGVSAKGCPVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10041897 [exp]	0	1
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	7.5	0.9194
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	7.5	0.9158
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	10.8	0.9075
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	11.9	0.9097
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000874 [exp]	14.7	0.8890
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	19.9	0.9063
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10031093 [exp]	22.2	0.8828
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	24.9	0.8887
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	29.3	0.8982
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028613 [exp]	29.7	0.8814

Compare expression of checked genes

Lus10041897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.