Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 348 / 4e-113 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G35987 277 / 6e-88 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G59050 156 / 6e-41 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 146 / 1e-37 ATPAO2 polyamine oxidase 2 (.1) AT1G65840 142 / 3e-36 ATPAO4 polyamine oxidase 4 (.1) AT1G62830 130 / 3e-31 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 122 / 1e-28 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G29720 99 / 2e-21 ATPAO5 polyamine oxidase 5 (.1) AT4G16310 99 / 4e-21 LDL3 LSD1-like 3 (.1) AT3G13682 97 / 1e-20 LDL2 LSD1-like2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019725 [exp] 690 / 0 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1) Lus10042168 [exp] 488 / 1e-167 AT5G13700 337 / 4e-111 polyamine oxidase 1 (.1) Lus10042127 [exp] 426 / 8e-144 AT5G13700 320 / 5e-105 polyamine oxidase 1 (.1) Lus10028446 [exp] 389 / 5e-131 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039599 [exp] 368 / 2e-120 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 291 / 3e-91 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10004260 [exp] 169 / 9e-47 AT5G13700 99 / 5e-23 polyamine oxidase 1 (.1) Lus10020726 [exp] 140 / 3e-35 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 134 / 2e-33 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074600 [exp] 605 / 0 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.012G079500 [exp] 507 / 7e-175 AT5G13700 400 / 7e-136 polyamine oxidase 1 (.1) Potri.009G058200 [exp] 385 / 3e-127 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1) Potri.001G263400 [exp] 372 / 4e-122 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.007G057000 [exp] 303 / 7e-98 AT4G35987 410 / 5e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G075800 [exp] 156 / 6e-41 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 155 / 2e-40 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 138 / 1e-34 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.002G055300 [exp] 135 / 9e-34 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.002G013100 [exp] 127 / 2e-30 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10041898 pacid=23146620 polypeptide=Lus10041898 locus=Lus10041898.g ID=Lus10041898.BGIv1.0 annot-version=v1.0 ATGGAACCAGTGTTGCTCCTCCTCTTAATCTCAACTCTCCTCTCAACAATCACAGCTTCTCATTCACCATCAGTCATCGTCGTCGGAGCCGGGATGTCAG GAATTTCTGCTGCAAAGACTCTTTACCAAGCTGGGATAAAGGACATTCTAATCCTCGAAGCCAGCTCCAGAATCGGCGGCCGGATCCGAAAGACAGAGTT CGGCGGGCACACAATCGAGATGGGGGCCAACTGGTTCAACACTGAAGGCCGAGTTGCTAACCCGGTCATTGAAATGGCCAAGCAAGTCAACCTTCGGTCT TACCTCAATGACTACTCCAACATCACCGCCAACGTCTACAAACAAGATGGAGGGATGTATACGAAGAAGGAGGTGGACGAAGTGGATAAGGTGTTCGTCG CCATGGAGGACTACTGCAACAAGTTCGCAAGGATCTTGTCTCGAAAATCAGATAAGGACTCGGATATGTCCACTTTGGCTTGCCAACATCTCTATGGAAG GGCACCATCGAGCCCACTGGAAATGGTGATGGATTACTACTACAACGACTACGAGGATGCAGAGCCACCGAAAACAACGAGTTTGAAACACGCTTATCCT CGAACTGAGGTCGAGGACCCGCATTTTGTTACGGATCCTAGAGGGTTTGGTGTAATAGTTGAGTATTTAGCAAGTCGGATTCTCCAGAAAGGAAGCCCTG TCACGCTTAAGCTCAACAAGGTGGTGAGGGAGATAATTTACTCCAAGAACAGAGTTTGGGTGAAAACCGAAGATGGCTCCTCATACTCAGGAAACTACAC CATTGTTTCGGCTAGCCTAGGTGTTCTTCAGTCCGAATTCATCCGGTTTAAGCCAAAGTTGCCGGTGTGGAAAAGAATGGCTATATCAGACATGACCATG GCAATTTACACCAAAATTTTCATGAAATTTCCTTACAAATTCTGGCCAACTGGAAACGGTACAGAGTTCTTCCTTTACTCCCATGTTCAGCGTGGATATT ACCCCATCTGGCAGCATCTGGAGAATGAGTTTCCAGGATCGAACATCTTAATGGTGACAATAACGTCCGACGAGTCCAGAAGAGTGGAACAACTGTCAGA TGAAGATGTTCAAAGAGAGGCCATGGTCGTTCTCAAGAAAATGTTTGGAGACAATGTTCCGGTACCGGTGAACATCTTGGTTCCCAGATGGGGTTCCAAC AGATTCTTTAGGGGAAGCTTTTCCGACTGGCCGCCGAACTACACCAAAGAAAAACACGACCACCTAAGGGCACCAGTAGGTCCAGTCTACTTCACCGGAG AGCACAACAACGACAAGTTCCTTGGATATGTGGACGGGGCTTACTTGGAAGGTCATTGGCCATCAGAAGATGTCCTTGCTTACTTTTGCTTGTCTCATGT AGATATGTTCAGATCTAAAAGGGTTATCGAGCTTGGGGCAGGCTATGGCCTAGCTGGATTAGTCATAGCAGCTATTAGTGAGGCATCTGAAGTTGTAATC TCCGATGGAAACCCTCAGGTGGTTGATTATATTCAGCGTAACATAGATGCCAACTCTGGAGCATTCGGTGGCACAAAAGTCAAGGCCATGACACTTCATT GGGGTGAAGAGGTAGCATCACATATGTCCAACTCCTTTGATGTCATTGTTGCTAGCGATTGTACCTTTTTCAAGGACTTCCACAAAAGCCTTGCTTCAGC TGTCAAACTCCTGTTAAGAAATGAAAGCACCTCGGAAGCAATCTTCATCAGCCCCCAAAGAGGAGACTCTTTAAACAAGTTCCTACACACAGTTGAAGAA ACTGGGCAGCATTTCTCAGTAACAGAGAACTACGACGCAGAAGTTTCGAAACGTCATCTTGTGTTTGAAAACGGCGTAGATGACTCGTGGCCGAGCTACA CTAAAGATCACTGCTACCCGTTACTGGTCCCTTTGATCACTACCTGCAAGTTGCTGCAAAATTTGACTAAGGTTCTCCAATCAGCAGTAAGAATTCCAAT GTAG
AA sequence Show only first row Show all	>Lus10041898 pacid=23146620 polypeptide=Lus10041898 locus=Lus10041898.g ID=Lus10041898.BGIv1.0 annot-version=v1.0 MEPVLLLLLISTLLSTITASHSPSVIVVGAGMSGISAAKTLYQAGIKDILILEASSRIGGRIRKTEFGGHTIEMGANWFNTEGRVANPVIEMAKQVNLRS YLNDYSNITANVYKQDGGMYTKKEVDEVDKVFVAMEDYCNKFARILSRKSDKDSDMSTLACQHLYGRAPSSPLEMVMDYYYNDYEDAEPPKTTSLKHAYP RTEVEDPHFVTDPRGFGVIVEYLASRILQKGSPVTLKLNKVVREIIYSKNRVWVKTEDGSSYSGNYTIVSASLGVLQSEFIRFKPKLPVWKRMAISDMTM AIYTKIFMKFPYKFWPTGNGTEFFLYSHVQRGYYPIWQHLENEFPGSNILMVTITSDESRRVEQLSDEDVQREAMVVLKKMFGDNVPVPVNILVPRWGSN RFFRGSFSDWPPNYTKEKHDHLRAPVGPVYFTGEHNNDKFLGYVDGAYLEGHWPSEDVLAYFCLSHVDMFRSKRVIELGAGYGLAGLVIAAISEASEVVI SDGNPQVVDYIQRNIDANSGAFGGTKVKAMTLHWGEEVASHMSNSFDVIVASDCTFFKDFHKSLASAVKLLLRNESTSEAIFISPQRGDSLNKFLHTVEE TGQHFSVTENYDAEVSKRHLVFENGVDDSWPSYTKDHCYPLLVPLITTCKLLQNLTKVLQSAVRIPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10041898 [exp]	0	1
AT3G05400			Major facilitator superfamily ...		Lus10029970 [exp]	2.8	0.8500
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	3.0	0.8792
AT4G37020			unknown protein		Lus10000435 [exp]	3.5	0.8683
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10026912 [exp]	4.9	0.8472
					Lus10006003 [exp]	7.1	0.8502
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10038187 [exp]	9.2	0.8276
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	9.5	0.8458
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	10.0	0.8442
AT5G57910			unknown protein		Lus10036255 [exp]	12.5	0.8335
AT5G61970			signal recognition particle-re...		Lus10040614 [exp]	13.5	0.8112

Compare expression of checked genes

Lus10041898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.