Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38660 343 / 1e-117 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 327 / 2e-112 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G20030 288 / 2e-96 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 285 / 9e-95 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 269 / 6e-90 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 263 / 2e-87 ATLP-3 thaumatin-like protein 3 (.1) AT1G75050 261 / 8e-87 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 261 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 260 / 2e-86 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G36010 255 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028447 [exp] 490 / 7e-176 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 331 / 6e-113 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 327 / 2e-112 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 322 / 2e-109 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10017265 [exp] 271 / 3e-89 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 264 / 4e-87 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10034534 [exp] 261 / 1e-85 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041901 [exp] 257 / 3e-84 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10033136 [exp] 256 / 7e-84 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112600 [exp] 398 / 2e-139 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 369 / 9e-128 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 367 / 4e-127 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 348 / 2e-119 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 346 / 5e-119 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 284 / 1e-94 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 283 / 3e-94 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 276 / 9e-92 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 264 / 7e-87 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.014G040700 [exp] 250 / 2e-82 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10041899 pacid=23146934 polypeptide=Lus10041899 locus=Lus10041899.g ID=Lus10041899.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCACATTTCTTCAATTGTTTCCTCACCCTTCTCTTACTATCATCCAAAGGTGTATGGGCGGCGACGTTTACATTTGTCAATAAATGTGACT ACACGGTCTGGCCGGGAATTCTCGGCACGCCGAAGTTGGACAGTACTGGATTTGAACTCGTCAAGGGAACTTCACGTTCTTTCCAAGCTCCCACCGGTTG GTCAGGCCGGTTCTGGGGACGGACGGGCTGTAATTTCGATGGTTCCGGCCAAGGTACTTGTGCCACTGCGGACTGCGGGTCCGGCCAGATTGAATGCAAC GGGGCCGGCGCCAATCCGCCGGCGACCTTGGCCGAGTTCACTCTCGGATCCGGTTCGCAGGATTTCTACGATGTGAGCCTTGTGGACGGCTACAACGTGC AGATGATCGTGGAGGCGAGCGGCGGATCCGGCGACTGCGCTTCCACCGGGTGCGTGACGGATCTTAATCGGAAGTGTCCATCGGAGCTGAAGGTGGACGG TGGATCCGCTTGCCGGAGCGCCTGCGAGGCGTTTGGGAACCCGGAGTACTGTTGTAGCGGCGCGCACAATACACCGGCGACGTGTAAGCCGTCGGTGTAC TCAGAGATGTTCAAGAGCGCGTGCCCTAAGTCGTATAGCTACGCTTACGATGATGCCACTAGTACTTTCACTTGCACCGCGGCCGATTACACCATCACAT TTTGTCCGAGCCTACCCAGCTTGAAGTCATCAAGTGATTCGTCGCCGCCGAAGGGTACTACATCAACGCCGGCGGCAGGAAATGGTTCAGGGGCAGGATC GGGGGCAGCGTCAGGGGCGATGGGAGGGACGGTGAATCAGCCGCAGCCGTATGCGGAGACGGTACAGGGAGCCGGCATGGGGGATCCTTGGCTAGCAAGT ATGGCTACCGGAGATTCAGCCTCAGCATCATCAGCAGCAATCGGACACAGTTTCTCAATTCTTCTTCAGGGTGGAATTCTTTTGATTAGTTGTTCATTCT TTGCTAGATTGGGTTTGTAG
AA sequence Show only first row Show all	>Lus10041899 pacid=23146934 polypeptide=Lus10041899 locus=Lus10041899.g ID=Lus10041899.BGIv1.0 annot-version=v1.0 MAASHFFNCFLTLLLLSSKGVWAATFTFVNKCDYTVWPGILGTPKLDSTGFELVKGTSRSFQAPTGWSGRFWGRTGCNFDGSGQGTCATADCGSGQIECN GAGANPPATLAEFTLGSGSQDFYDVSLVDGYNVQMIVEASGGSGDCASTGCVTDLNRKCPSELKVDGGSACRSACEAFGNPEYCCSGAHNTPATCKPSVY SEMFKSACPKSYSYAYDDATSTFTCTAADYTITFCPSLPSLKSSSDSSPPKGTTSTPAAGNGSGAGSGAASGAMGGTVNQPQPYAETVQGAGMGDPWLAS MATGDSASASSAAIGHSFSILLQGGILLISCSFFARLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38660			Pathogenesis-related thaumatin...		Lus10041899 [exp]	0	1
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	4.4	0.8698
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	6.9	0.8687
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	8.0	0.8547
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	10.1	0.8616
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10000023 [exp]	11.0	0.8306
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10021234 [exp]	13.4	0.8248
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	17.0	0.8498
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	18.5	0.8407
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	19.1	0.8104
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	19.3	0.8409

Compare expression of checked genes

Lus10041899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.