Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36010 330 / 1e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 315 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 312 / 2e-106 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 303 / 6e-104 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38670 298 / 1e-101 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT4G24180 267 / 2e-89 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT4G38660 268 / 2e-88 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G24620 263 / 1e-85 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G38280 263 / 3e-83 PR5K PR5-like receptor kinase (.1) AT1G18250 249 / 1e-82 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028448 [exp] 468 / 4e-168 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10034534 [exp] 313 / 2e-106 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 304 / 5e-103 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 301 / 5e-102 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10013561 [exp] 291 / 6e-98 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 289 / 3e-97 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10023897 [exp] 263 / 4e-88 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10036435 [exp] 278 / 2e-87 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10028447 [exp] 258 / 6e-85 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112700 [exp] 373 / 1e-130 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020500 [exp] 314 / 4e-107 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 307 / 2e-104 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 295 / 1e-99 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 288 / 9e-97 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 287 / 9e-97 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.004G173200 [exp] 270 / 1e-89 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 270 / 1e-89 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G014574 [exp] 260 / 8e-87 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 259 / 1e-86 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10041901 pacid=23147005 polypeptide=Lus10041901 locus=Lus10041901.g ID=Lus10041901.BGIv1.0 annot-version=v1.0 ATGGCTCTCTCAATTCCCGGCCTCTTCTTCTTCTTCATTCTTTCTCTCCTGATCCCCCATTCCCCCGCCGCCACATTCACCATCGCCAACAACTGCAATT ACCCCATCTGGCCGGGGATCCTCTCCAGCGCCGGCACTGCCCAGCTCGCCACCACCGGATTCCTCCTCCAGCCCTCCCAATCCTCCGCCATCGACTTCCC ACCCGCCTGGTCCGGCCGCCTCTGGGCCCGCACTCTATGCACAACCGACCCCACCACCAACAAATTCACCTGCCTCACCGGCGACTGCGGCTCCGGCACC CTCGAATGCTCCGGCGGCGGCGCCTCCCCTCCCGCCACCCTAGCAGAAATCACCCTCCTCGGCGCCGAATCCAAGGACTTCTACGACGTCAGCCTTGTCG ACGGCTACAATCTCCCCATGCTCATCACCCCACAGGGCGGCGACGGCAACTGCACCGTCACTGGGTGCGTCGTGGAACTGAACGGCGCGTGTCCTTCGGA GCTGAAAGTGATGGACGCGCAGAACGGGAGGAGCGTGGCCTGCAAGAGCGCATGTGACGCGTTTGGGGACCCGCAGTATTGCTGTAGCGGAGAGTTCGGC ACGCCAGACACATGTAAGCCCAGTACCTATTCGGAGTTCTTTAAAAATGCGTGCCCCAGAGCTTACAGTTACGCCTACGACGACGGCACCAGTACCTTCA CTTGCTCCTCCGGCAACGATTACGTCGTCACCTTCTGCCCTTCTTCTACCCCTAGCTTGAAGTCGGAGGAGAGCGATCGTCCGGCTCCGGAACCAGCAAA AGTGTCGGCGGCATATCGTGAAACGTCAATTTCATTACTAGGGGTAGCCGTCGTTTCAATGGCGGTTGTTTGTCATTTGCGGCGGCTGTTTTAA
AA sequence Show only first row Show all	>Lus10041901 pacid=23147005 polypeptide=Lus10041901 locus=Lus10041901.g ID=Lus10041901.BGIv1.0 annot-version=v1.0 MALSIPGLFFFFILSLLIPHSPAATFTIANNCNYPIWPGILSSAGTAQLATTGFLLQPSQSSAIDFPPAWSGRLWARTLCTTDPTTNKFTCLTGDCGSGT LECSGGGASPPATLAEITLLGAESKDFYDVSLVDGYNLPMLITPQGGDGNCTVTGCVVELNGACPSELKVMDAQNGRSVACKSACDAFGDPQYCCSGEFG TPDTCKPSTYSEFFKNACPRAYSYAYDDGTSTFTCSSGNDYVVTFCPSSTPSLKSEESDRPAPEPAKVSAAYRETSISLLGVAVVSMAVVCHLRRLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36010			Pathogenesis-related thaumatin...		Lus10041901 [exp]	0	1
AT1G59970			Matrixin family protein (.1)		Lus10030662 [exp]	5.7	0.8236
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10012372 [exp]	13.2	0.7976
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	14.1	0.7988
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	15.2	0.7895
AT4G36010			Pathogenesis-related thaumatin...		Lus10028448 [exp]	17.7	0.7616
AT4G34180			Cyclase family protein (.1)		Lus10001508 [exp]	22.1	0.7911
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10013042 [exp]	24.1	0.7966
AT1G64700			unknown protein		Lus10017341 [exp]	27.8	0.7921
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	27.9	0.7244
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	29.8	0.7848

Compare expression of checked genes

Lus10041901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.