Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36020 138 / 2e-39 CSDP1 cold shock domain protein 1 (.1) AT2G17870 129 / 9e-36 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT3G42860 73 / 1e-14 zinc knuckle (CCHC-type) family protein (.1) AT2G21060 69 / 6e-14 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT4G38680 53 / 2e-08 ATCSP2, CSDP2, GRP2 COLD SHOCK DOMAIN PROTEIN 2, ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, glycine rich protein 2 (.1) AT1G75560 53 / 4e-08 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) AT5G52380 52 / 6e-08 VASCULAR-RELATED NAC-DOMAIN 6 (.1) AT3G43590 50 / 7e-07 zinc knuckle (CCHC-type) family protein (.1) AT3G53500 46 / 6e-06 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT2G37340 45 / 2e-05 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028449 [exp] 340 / 4e-119 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10028073 [exp] 82 / 6e-19 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10025058 [exp] 75 / 2e-17 AT2G21060 112 / 6e-33 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10005066 [exp] 69 / 3e-14 AT2G17870 122 / 1e-35 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Lus10027839 [exp] 68 / 5e-14 AT2G21060 110 / 6e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10034487 [exp] 66 / 3e-13 AT2G21060 110 / 7e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10025623 [exp] 64 / 1e-12 ND 81 / 8e-20 Lus10008437 [exp] 62 / 5e-11 AT3G43590 264 / 4e-80 zinc knuckle (CCHC-type) family protein (.1) Lus10013378 [exp] 62 / 8e-11 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112800 [exp] 212 / 7e-69 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 192 / 3e-61 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.009G132000 [exp] 84 / 2e-19 AT2G21060 103 / 1e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.004G172600 [exp] 83 / 4e-19 AT2G21060 102 / 3e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.002G086900 [exp] 77 / 3e-17 AT2G17870 89 / 2e-21 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G174300 [exp] 70 / 2e-14 AT2G17870 92 / 1e-22 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G234700 [exp] 59 / 4e-10 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.009G155500 [exp] 59 / 1e-09 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.004G161800 [exp] 57 / 2e-09 AT1G75560 273 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.004G193500 [exp] 54 / 5e-08 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00313 [flax] [poplar] CSD 'Cold-shock' DNA-binding domain CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10041902 pacid=23147048 polypeptide=Lus10041902 locus=Lus10041902.g ID=Lus10041902.BGIv1.0 annot-version=v1.0 ATGGCGGAAGATCAGGCAGTTAGATCTTCATCCGCAGTGAGGACCACCGGCAAGGTCGTCAAGTTCAGCGACAAGAAGGGTTTCGGCTTCATCAAGCCCA ACGATGGCAGCGACGATTTGTTCGTCCATCACACCGCGATCAAGTCCGACGGCGGGTACCGCACCCTCACCGAGGAAGACGTCGTCGAGTTCGAAGTAGC CGAGACGGACGGCAAGTGCCAGGCTGTCAACGTCACTGCTCCCGGTGGAGGTGCGATTCAGGCGGGGAAACGAGGCGGAGGGGACGGTTACGCCAGGCGC GGTGCTGGATCCGGAGCGCCGTGGAACAGGCGTAGCAACGCCGGCGGTTGTTACACCTGCGGAAACCCTAACCACATCGCGAGGGAGTGCAACAGTCGCA GCGAGGGCGTTGGCAGCTGCTTCAAGTGTGGGACCGCTGGACATTTTGCTCGGGACTGTCCGCAGGCTGTTAACGGCCGCGGTGGCGGAGGAGGAGGTGG AACTGCTGGCGTGGCTTGCTTTAGCTGCAGTGGATTCGGACACTTGGCTAGGGATTGTCCAGGCGGCAGCGGATCTTGCTACAACTGTGGGGGTCATGGA CACTTCGCTAGAGATTGTACAAGCGCTAGGAGCGTGGGCGGTGGCGGTGGTGGCGGCAACAGGGTTGGGTCCAACAGTGCTTGCTTCAGTTGTGGGAAGC TAGGACACTTTGCAAGGGATTGTACCAACCCTGAGTTTTGA
AA sequence Show only first row Show all	>Lus10041902 pacid=23147048 polypeptide=Lus10041902 locus=Lus10041902.g ID=Lus10041902.BGIv1.0 annot-version=v1.0 MAEDQAVRSSSAVRTTGKVVKFSDKKGFGFIKPNDGSDDLFVHHTAIKSDGGYRTLTEEDVVEFEVAETDGKCQAVNVTAPGGGAIQAGKRGGGDGYARR GAGSGAPWNRRSNAGGCYTCGNPNHIARECNSRSEGVGSCFKCGTAGHFARDCPQAVNGRGGGGGGGTAGVACFSCSGFGHLARDCPGGSGSCYNCGGHG HFARDCTSARSVGGGGGGGNRVGSNSACFSCGKLGHFARDCTNPEF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	0	1
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	1.7	0.9291
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	2.8	0.8906
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	3.0	0.9121
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	4.0	0.9187
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Lus10005066 [exp]	4.9	0.9000
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	8.1	0.8822
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10018605 [exp]	8.5	0.8878
AT5G06660			Protein of unknown function DU...		Lus10016235 [exp]	8.5	0.8573
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	8.8	0.8981
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	8.9	0.8981

Compare expression of checked genes

Lus10041902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.