Plant FIBer expression Database

Lus10041903 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G23940 229 / 8e-78 Protein of unknown function (DUF788) (.1)
AT4G30500 211 / 7e-71 Protein of unknown function (DUF788) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028450
[exp]
280 / 8e-98 AT2G23940 295 / 5e-104 Protein of unknown function (DUF788) (.1)
Lus10010382
[exp]
57 / 6e-11 ND 52 / 1e-09
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G101100
[exp]
249 / 1e-85 AT2G23940 228 / 4e-77 Protein of unknown function (DUF788) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05620 TMEM208_SND2 SRP-independent targeting protein 2/TMEM208
Representative CDS sequence
>Lus10041903 pacid=23146897 polypeptide=Lus10041903 locus=Lus10041903.g ID=Lus10041903.BGIv1.0 annot-version=v1.0
ATGGCGAATCAGGGAGCTAAGAAGCGCAAGGAAGAGAACTCCCGCCACATGGCTAATCTCCGTCGCATCATCATCGCATGCAATGTTATATATGTGTTGG
TGAGGCTGTTGATATTCCATTCGAGTTTCACATGGAAGCACTGGATTGGCTTGGTATTGACTTCTCTAGCATATTACTTCCCTTACCAACAACTTGCTTC
CATGGCCAAACCAAGCTATGGAGATGATGGGGAGCTTTTCGATGGTGGTTTTGATATGAGCACTACTGGGATTTGTGGATATCTTCATGATGTTATCTAC
ATCACAAGCTTTGTGCAGATTGCGTCCATTCTGTCTGATAAGTTTTGGTACACATATCTTGTGATCCCGGCATTTGGAGCATACAAGTCGTATGGGTTAA
TCAAGGGATTCTTGCCACAAGGTTCAGAGGGAGGCGAGGAGGATGAAAAGACTCGTAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCACGGGGCAAGTT
TGTCAAGACAAAAACCAGATGA
AA sequence
>Lus10041903 pacid=23146897 polypeptide=Lus10041903 locus=Lus10041903.g ID=Lus10041903.BGIv1.0 annot-version=v1.0
MANQGAKKRKEENSRHMANLRRIIIACNVIYVLVRLLIFHSSFTWKHWIGLVLTSLAYYFPYQQLASMAKPSYGDDGELFDGGFDMSTTGICGYLHDVIY
ITSFVQIASILSDKFWYTYLVIPAFGAYKSYGLIKGFLPQGSEGGEEDEKTRKKREKMEKKASRGKFVKTKTR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G23940 Protein of unknown function (D... Lus10041903
[exp]
0 1
AT2G25310 Protein of unknown function (D... Lus10001955
[exp]
1.4 0.9163
AT5G55290 ATPase, V0 complex, subunit E ... Lus10032570
[exp]
1.4 0.9080
AT1G12390 Cornichon family protein (.1) Lus10004320
[exp]
2.4 0.8823
AT5G59460 scarecrow-like transcription f... Lus10004969
[exp]
3.5 0.9068
AT5G51510 unknown protein Lus10027200
[exp]
3.5 0.9013
AT5G58030 Transport protein particle (TR... Lus10003350
[exp]
4.5 0.8911
AT4G01710 ARPC5, CRK CROOKED, ARP2/3 complex 16 kDa... Lus10028192
[exp]
8.0 0.8732
AT4G36800 RCE1 RUB1 conjugating enzyme 1 (.1.... Lus10014329
[exp]
9.5 0.8754
AT1G51740 ATSYP81, SYP81,... ORTHOLOG OF YEAST UFE1 \(UNKNO... Lus10040237
[exp]
11.2 0.8452
AT2G37120 S1FA-like DNA-binding protein ... Lus10023177
[exp]
11.4 0.8371

Lus10041903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.