Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66200 904 / 0 ARO2 armadillo repeat only 2 (.1) AT4G34940 865 / 0 ARO1 armadillo repeat only 1 (.1) AT4G36030 777 / 0 ARO3 armadillo repeat only 3 (.1) AT3G26600 353 / 3e-113 ARO4 armadillo repeat only 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028452 [exp] 1204 / 0 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10025059 [exp] 845 / 0 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10027837 [exp] 474 / 1e-162 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10037086 [exp] 356 / 2e-118 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10027838 [exp] 345 / 3e-115 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10036897 [exp] 285 / 3e-88 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10037087 [exp] 248 / 2e-78 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1) Lus10005065 [exp] 210 / 1e-64 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1) Lus10004620 [exp] 191 / 3e-52 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113000 [exp] 1003 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.004G172500 [exp] 897 / 0 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 861 / 0 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.010G045500 [exp] 209 / 6e-59 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.015G082800 [exp] 205 / 1e-57 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10041905 pacid=23146955 polypeptide=Lus10041905 locus=Lus10041905.g ID=Lus10041905.BGIv1.0 annot-version=v1.0 ATGGCGGACTTGGTCAAGCAGATCTTGGCGAAGCCAATCCAACTGGCCGACCACGTCATCAAATCCGCCGACGAAGCCAGCTCCTTCAAGCAGGACTGCG GAGCGCTCAAATCCAAGACCGAAAAGCGCGCCGCTTTACTCCGTCAAGCCGCTAGGGCAAGTTCCGACCTTTACGAGCGCCCCACCCGCCGCATAATCGA CGACACGGAACAAGTCCTCGACAAAGCCCTAGCCTTGGTTGTCAAATGCAGAGGCAACGGGATTATGAAGCGCGTCTTCACCATCATCCCTACCGCCGCC TTCCGCAAGATGTCGGCTCAGCTTGAGAACTCAATCGGCGATGTCTCCTGGCTCCTCCGCGTTTCCGCCCCTGCTGACGACCGCGACAACGAGTACCTCG GGCTCCCTCCCATTGCCGCCAACGAGCCCATCCTCTGCCTGATTTGGGAGCAGATCGCGATTCTCTACACCGGCTCCCTCGACGATAGATCTGACGCCGC TGCCTCGCTCGTTTCCCTTGCTAGAGACAACGATCGGTATGGTAAGTTGATAATCGAGGAAGGAGGTGTTCAGCCGTTGTTGAAATTGGTCAAAGATGGG AAAGCTGAAGGTCAGGAGAATGCCGCCAGGGCTATCGGGTTGCTGGGTCGGGACCCGGAAAGTGTGGAGCATATGATTCACGCTGGGGTTTGCTCCGTCT TCGCCAAAATCTTGAAAGAAGGTCCGATGAAGGTTCAGGCTGTAGTAGCTTGGGCAGTTTCCGAGCTGGCTGCTCATTACAGGAAGTGTCAAGACCTCTT TGCTCAGCACAATATAATCAGGTTGTTGGTTGGTCATCTGGCGTTCGAGACTGTTCAGGAACACAGTAAGTACGCCATTGTTAGCCAGAAGGCTACTTCT ATCCACGCTGTGTTATTGGCTAGCAACAACAACAGTAACAATTCCACCAACGTTTCTGTTCCTAGTACCAATTTTGAGGAAGATAAGAGCAGGATTTCTC ATCCCTTAGGGAATAGAACTAGGAGCCAGTTCCATAATGTGATTGAGAACACATTGGCCATGAATGCTGGCACTAAGCTTGGTAATGGGAATATGAATGT TCCTTTGGTTAGTAATGGGAATGGGAATGCGAACATGAATGTTGTTGTTGCTAAGCAGGCTGCTACTATTCACCATCAGCACACAAGTTCGTTATCGGCT GTGAATCTTAAAGGGAGGGAAAGTGAAGATCCAACTGTTAAGGCTCGGATGAAAGCAATGGCTGCAAGAGCTCTTTGGCATCTTGCGAAAGGGAATTCGC CTATTTGTCGGAGCATTACCGAGTCGAGAGCTCTCCTGTGTTTTGCAGTTCTATTGGAGAAAGGAAGTGGAGAAGTACAGTACAATTCAGCCATGGCAGT GATGGAGTTGACAGCAGTAGCGGAAGAGGATTCCGATCTGAGAAGAGCTGCATTCAAGCCCAATGCTCCTGCTTGTAAAGCTGTGGTGGATCAAATGTTG AAGATCATCGAGGAAGCGGATTCAGAGCTTTTGATACCTTGTGTCAAGGCGATTGGAAATTTGGCGAGGACGTTCAGAGCTACAGAGACCAGGATGATTT CGCCGCTGGTTAAGCTCTTGGATGAGAGGGAGGCTGAGGTTTCGAGGGAGGCTTCGATTGCTCTCGCCAAGTTTGCCTGTTCCGATAACTACCTCCACCT CGATCACTGTAAGGGAATCATCACTGCCGGCGGGGCAAAGCATTTGATCCAGCTGGTGTACTTTGGTGAACAAGTAGTTCAGATATCATCTCTGGTACTT CTTTGCTACATTGCTCTGCATGTTCCAGATAGCGAGGAGCTCGCAAAGGCAGAAGTGCTGACTGTTCTGGAATGGGCTTGCAAGCAAGCTTTCATCACAC AGAATGAAATACTGGATCAGCTCCTTCCTGAAGCCAAGAGCAGATTGGAACTCTACCAATCAAGAGGTTCAAGGGGATTCCATTAA
AA sequence Show only first row Show all	>Lus10041905 pacid=23146955 polypeptide=Lus10041905 locus=Lus10041905.g ID=Lus10041905.BGIv1.0 annot-version=v1.0 MADLVKQILAKPIQLADHVIKSADEASSFKQDCGALKSKTEKRAALLRQAARASSDLYERPTRRIIDDTEQVLDKALALVVKCRGNGIMKRVFTIIPTAA FRKMSAQLENSIGDVSWLLRVSAPADDRDNEYLGLPPIAANEPILCLIWEQIAILYTGSLDDRSDAAASLVSLARDNDRYGKLIIEEGGVQPLLKLVKDG KAEGQENAARAIGLLGRDPESVEHMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELAAHYRKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSQKATS IHAVLLASNNNSNNSTNVSVPSTNFEEDKSRISHPLGNRTRSQFHNVIENTLAMNAGTKLGNGNMNVPLVSNGNGNANMNVVVAKQAATIHHQHTSSLSA VNLKGRESEDPTVKARMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGSGEVQYNSAMAVMELTAVAEEDSDLRRAAFKPNAPACKAVVDQML KIIEEADSELLIPCVKAIGNLARTFRATETRMISPLVKLLDEREAEVSREASIALAKFACSDNYLHLDHCKGIITAGGAKHLIQLVYFGEQVVQISSLVL LCYIALHVPDSEELAKAEVLTVLEWACKQAFITQNEILDQLLPEAKSRLELYQSRGSRGFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	0	1
AT3G52240			unknown protein		Lus10034158 [exp]	1.4	0.8737
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10028452 [exp]	2.2	0.8641
					Lus10039441 [exp]	4.5	0.8671
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10032848 [exp]	4.7	0.8771
AT3G21570			unknown protein		Lus10012773 [exp]	8.3	0.8703
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10038220 [exp]	10.2	0.8436
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	10.7	0.8240
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	11.0	0.8610
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10014729 [exp]	11.2	0.8279
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	11.8	0.8423

Compare expression of checked genes

Lus10041905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.