Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17880 133 / 3e-40 Chaperone DnaJ-domain superfamily protein (.1) AT4G36040 133 / 3e-40 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT3G13310 82 / 4e-20 Chaperone DnaJ-domain superfamily protein (.1) AT4G13830 76 / 8e-18 J20 DNAJ-like 20 (.1.2) AT4G39960 66 / 4e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 64 / 2e-12 DNAJ heat shock family protein (.1) AT3G17830 62 / 7e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G37480 62 / 8e-12 Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 61 / 2e-11 ATJ6, EMB1393 J-domain protein 6 (.1) AT1G80030 61 / 3e-11 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028453 [exp] 214 / 3e-72 AT2G17880 146 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Lus10017263 [exp] 109 / 9e-31 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10034484 [exp] 100 / 4e-28 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10025060 [exp] 89 / 1e-23 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10032957 [exp] 84 / 3e-21 AT3G13310 109 / 2e-31 Chaperone DnaJ-domain superfamily protein (.1) Lus10013558 [exp] 78 / 1e-19 AT4G36040 82 / 1e-21 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10002355 [exp] 76 / 3e-17 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10002356 [exp] 71 / 2e-15 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10016637 [exp] 71 / 2e-15 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113100 [exp] 152 / 5e-48 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 123 / 1e-36 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 117 / 8e-35 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 117 / 7e-34 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 115 / 6e-33 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 114 / 1e-32 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G469600 [exp] 86 / 1e-21 AT3G13310 120 / 4e-35 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G166500 [exp] 82 / 6e-20 AT3G13310 115 / 4e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G107600 [exp] 77 / 2e-18 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 75 / 1e-17 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10041906 pacid=23146857 polypeptide=Lus10041906 locus=Lus10041906.g ID=Lus10041906.BGIv1.0 annot-version=v1.0 ATGATGCCCACAGCAGTTATTTCTCCTCCTCTTTCCCCAGTCTTCCAATTCTCCCCCAAATCCCCTTCCTCCGCCTCCGGCCGCCGCTCCCAATCGGGGC CGCCTCCGATCTTCAATTCGGCGACCGCGTACAGGGAGAGACCCAGAGTCTCCATGCCTCCTCCGAGGATGCCTTCCTCCTCCTCCTCTCTGTACGAGAT CCTAGGAATTCAGAGCGGCGCCTCCAGCCAGGAGATCAAATCGGCCTACAGGAAGCTCGCGAGGACTTGCCATCCAGATGTGGCCGCGATCGACCGCAAG GACAACTCCGCTGACGAGTTCATGAGGATCCACGCCGCCTACACCACTCTCTCCGATCCCGAGAGGCGCGTCGTTTACGATCGGAAGCAGCTGTTCAGGC GGATGCAGCCGCTGACCACCGCCGGATTGTCCGGGTACAGCGGCCGGAGCTGGGAGACCGATCAGTGCTGGTGA
AA sequence Show only first row Show all	>Lus10041906 pacid=23146857 polypeptide=Lus10041906 locus=Lus10041906.g ID=Lus10041906.BGIv1.0 annot-version=v1.0 MMPTAVISPPLSPVFQFSPKSPSSASGRRSQSGPPPIFNSATAYRERPRVSMPPPRMPSSSSSLYEILGIQSGASSQEIKSAYRKLARTCHPDVAAIDRK DNSADEFMRIHAAYTTLSDPERRVVYDRKQLFRRMQPLTTAGLSGYSGRSWETDQCW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10041906 [exp]	0	1
AT2G17880			Chaperone DnaJ-domain superfam...		Lus10028453 [exp]	1.0	0.9497
AT4G28240			Wound-responsive family protei...		Lus10033728 [exp]	4.2	0.8631
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	8.8	0.8702
AT1G15670			Galactose oxidase/kelch repeat...		Lus10013538 [exp]	9.6	0.8559
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	9.7	0.9143
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	13.1	0.8625
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	13.3	0.8865
AT3G15358			unknown protein		Lus10011176 [exp]	16.2	0.8562
AT2G27940			RING/U-box superfamily protein...		Lus10016163 [exp]	19.9	0.8460
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10002254 [exp]	20.6	0.8847

Compare expression of checked genes

Lus10041906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.