Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36050 392 / 6e-128 endonuclease/exonuclease/phosphatase family protein (.1.2) AT1G72200 80 / 1e-15 RING/U-box superfamily protein (.1) AT4G28890 78 / 6e-15 RING/U-box superfamily protein (.1) AT1G35330 76 / 8e-15 RING/U-box superfamily protein (.1) AT4G40070 76 / 8e-15 RING/U-box superfamily protein (.1) AT1G76410 73 / 2e-14 ATL8 RING/U-box superfamily protein (.1) AT4G17905 74 / 3e-14 ATL4H RING/U-box superfamily protein (.1) AT3G62690 73 / 6e-14 ATL5 AtL5 (.1) AT1G22500 74 / 7e-14 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT2G35000 74 / 9e-14 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028455 [exp] 833 / 0 AT4G36050 650 / 0.0 endonuclease/exonuclease/phosphatase family protein (.1.2) Lus10028454 [exp] 377 / 8e-128 AT1G72200 85 / 3e-19 RING/U-box superfamily protein (.1) Lus10013210 [exp] 76 / 3e-15 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1) Lus10009511 [exp] 78 / 6e-15 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10030728 [exp] 73 / 2e-14 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10004460 [exp] 76 / 3e-14 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10025146 [exp] 72 / 4e-14 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10029456 [exp] 69 / 4e-14 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10011702 [exp] 75 / 5e-14 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057400 [exp] 504 / 1e-171 AT4G36050 622 / 0.0 endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.005G113301 [exp] 149 / 1e-40 AT4G36050 152 / 4e-44 endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.005G113200 [exp] 84 / 4e-18 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.007G057300 [exp] 81 / 2e-17 AT2G17450 66 / 1e-13 RING-H2 finger A3A (.1) Potri.003G093500 [exp] 75 / 1e-14 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 72 / 2e-14 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 72 / 3e-14 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 71 / 4e-14 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 72 / 5e-14 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 71 / 5e-14 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10041907 pacid=23146759 polypeptide=Lus10041907 locus=Lus10041907.g ID=Lus10041907.BGIv1.0 annot-version=v1.0 ATGCGAACAATGGAGATGGAAGGAGGAGCAAACGGACTGAAGATTGTGACTTACAACGTCAATGGGTTGAGGCAACGGATATCACCGTTCGGTTTTCTTC TCAAACTGCTTGATTCTTTCGATGCCGACATCATCTGTTTTCAGGAAACGAAACTGAGGAAGCAAGAACTGACGTCTGGTGTGGCAACTTTCTGCCTGGT TAAGTCTGCATTCTCTAGTATAGAAGTGGCATTGCCCATTGCTGCAGAGGAAGGTTTCACTGGTCTTGTTGATAGATCCAAAAGCGGCAAAGATGCTGGG CCAGTGATGTTGGCAGTTCTTTTTAACATATACGGACCTCGAGCAGACCCAAGTGACACGGAGAGGATTAAGTTGAAGTTCATTTTTTACAAGATATTGA AGAAAAGATGGGATAATCTGCTAGATCAAGGAAGGAGGGTGCTTGCCGTTGGTGATCTCAACATTGCTCCTTCTTCTGTGGATAGATGTGAAGCCAGTCC AGAATTTGAGAAGAATGAGTTCTGGATGTGGTTTAGATCTTTGCTAGTGCAATCAGGAGGGCGTTTCTCTGATGTTTTTAGAGATAAACATCCTGATAGA AAAGATGCATACACATGCTGGTCAACCAGTACAGGCGCTGAACAATTTAATTACGGAAGTAGAATCGATCATATTCTCTGTGCTGGATCATGCTTGCATG AAGTGGATGATGATGATCAACAAGGCCACAGTATCGTTAGTTGTCATGTCAAAGAGTGTGACATATTGACGGAGTATAAACGTCGGAAACCTGGAAATAC AGCTAGGTTTAGATGGAAAGGAGAAAGGGACATCAAACTCGAAGGTTCAGATCATGCTCCTGTATCTGCGACTTTGATACACATTCCTGATGTATGCCAA CATAGCACCCCACCCCTATCGTTGAGATATCTCCACATGGTTCGAGGTCTCCAACAAACGCTTGATGGTAATAGTTGCAATATAGCTGAACCTTCTACCA TAGATTCGAGTTCCCAGGACAAGGATGCCGGTGGAAATTTAGTGCCTGCTGCAAGAAGTAAGATGCAAGCAAGAAAGGGTCAACTTTCCCTGAGGTCATT TTTCCAGACAAGCTCAAAACTTGCCAGTGTGTCTTATATTTCCCACCTTCCGATTCCCCTGAGCGTCACTTCCACGTCAAATGATCAGCATGGAAGTCTC GAACCAGATGAACCAAGGCCAAGTGGTGGAAGTCAGGATGATGATCAAGAGCATGCTTCTGACGATTCTGTAACGAAAAGTAAGAACAGCAATGCATTGA TGGACTGGCAGAGGATACAACAACTGATGCTGAATAGCATCCCTCTCTGCAAAGGCCATAAAGAACCGTGCGTTGCCCGGGTTGTCCGGAAACCCAGTCC GACTTTCGGCCGAAGATTTTACGTCTGTGCTCGAGCAGAGATGGACTATCTAATCAACGCTCGCCATCTCCAACTCTCAAGCCGGAGAATTCTTCTGGAT TCCGCTATGCTGCCTGGAGAAAACCGCAGCTCTCTGGCGTTGAGGATCCTGCTCACTTGCGGCACGTTCGCCATTCTTTTCGCCGTCCTCTGCTTCTTCG CCGTGTGCCTCGGCAAATGCTGTCAGTCATCAGCTGAGTCGTCCGACCAGGAAAGGAATAATAGCGAGAATCGTAATCAGACGGCGGCGAAGAAGAAGAG GGAACAAGTGGTGAAGCAAGTTCTGACGACGTTTCCGGCGTACACCTACGGCGCCGACGAATCTCCACTGCCGGATCAATCGCGGTGTTGCTCTGCGGGG GCGATTTGTTCGATCTGCCTGGGCGAGTATCAGAAGGGGGAGTGTTTAAGGCTGCTGCCAAAGTGTGGCCATGTCTTCCACAAGGGGTGTATCGACCTAT GGCTATCGACTCGCTCTTCCAACTGTCCGATTTGCAGGGACCAGGCGGTGGTTGTCACGAACGTCGAACAGTCTTCCAGTGACGGAGGAGTTATAGGAAC TGGGAGGAGTTTCATTTCATCGTGGAACGTCAATCTCGGCACTGGTAGTGTTCTTTAA
AA sequence Show only first row Show all	>Lus10041907 pacid=23146759 polypeptide=Lus10041907 locus=Lus10041907.g ID=Lus10041907.BGIv1.0 annot-version=v1.0 MRTMEMEGGANGLKIVTYNVNGLRQRISPFGFLLKLLDSFDADIICFQETKLRKQELTSGVATFCLVKSAFSSIEVALPIAAEEGFTGLVDRSKSGKDAG PVMLAVLFNIYGPRADPSDTERIKLKFIFYKILKKRWDNLLDQGRRVLAVGDLNIAPSSVDRCEASPEFEKNEFWMWFRSLLVQSGGRFSDVFRDKHPDR KDAYTCWSTSTGAEQFNYGSRIDHILCAGSCLHEVDDDDQQGHSIVSCHVKECDILTEYKRRKPGNTARFRWKGERDIKLEGSDHAPVSATLIHIPDVCQ HSTPPLSLRYLHMVRGLQQTLDGNSCNIAEPSTIDSSSQDKDAGGNLVPAARSKMQARKGQLSLRSFFQTSSKLASVSYISHLPIPLSVTSTSNDQHGSL EPDEPRPSGGSQDDDQEHASDDSVTKSKNSNALMDWQRIQQLMLNSIPLCKGHKEPCVARVVRKPSPTFGRRFYVCARAEMDYLINARHLQLSSRRILLD SAMLPGENRSSLALRILLTCGTFAILFAVLCFFAVCLGKCCQSSAESSDQERNNSENRNQTAAKKKREQVVKQVLTTFPAYTYGADESPLPDQSRCCSAG AICSICLGEYQKGECLRLLPKCGHVFHKGCIDLWLSTRSSNCPICRDQAVVVTNVEQSSSDGGVIGTGRSFISSWNVNLGTGSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36050			endonuclease/exonuclease/phosp...		Lus10041907 [exp]	0	1
AT1G06980			unknown protein		Lus10009561 [exp]	7.4	0.6766
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	8.0	0.7488
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016472 [exp]	13.5	0.6559
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	14.8	0.6887
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	20.3	0.6843
AT5G44000			Glutathione S-transferase fami...		Lus10038943 [exp]	21.3	0.6725
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	23.3	0.6897
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	26.3	0.6874
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	28.8	0.6835
AT4G19130			Replication factor-A protein 1...		Lus10003955 [exp]	29.0	0.6839

Compare expression of checked genes

Lus10041907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.