Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17930 988 / 0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) AT4G36080 932 / 0 phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases (.1.2.3) AT1G50030 84 / 1e-16 TOR target of rapamycin (.1.2) AT5G40820 75 / 1e-13 ATATR, ATRAD3, ATR ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) AT3G48190 55 / 2e-07 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028458 [exp] 1123 / 0 AT2G17930 6325 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10041910 [exp] 1056 / 0 AT2G17930 5862 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10023991 [exp] 98 / 5e-21 AT5G40820 3276 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10025091 [exp] 97 / 1e-20 AT5G40820 3033 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10037246 [exp] 82 / 9e-16 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 78 / 2e-14 AT1G50030 2590 / 0.0 target of rapamycin (.1.2) Lus10023840 [exp] 67 / 4e-11 AT1G50030 239 / 2e-62 target of rapamycin (.1.2) Lus10019489 [exp] 57 / 5e-08 AT3G48190 3373 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114300 [exp] 1039 / 0 AT2G17930 6266 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Potri.007G057850 [exp] 1035 / 0 AT2G17930 1074 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Potri.004G179000 [exp] 91 / 8e-19 AT5G40820 3459 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Potri.009G084500 [exp] 89 / 4e-18 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.001G289200 [exp] 86 / 3e-17 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.015G076650 [exp] 65 / 1e-10 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.004G147800 [exp] 62 / 9e-10 AT1G50030 252 / 2e-66 target of rapamycin (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02260 [flax] [poplar] FATC FATC domain CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10041911 pacid=23146720 polypeptide=Lus10041911 locus=Lus10041911.g ID=Lus10041911.BGIv1.0 annot-version=v1.0 ATGGAGGCTCTTAGGACTAAGCACACTAATTTGGCTAGTGAGCTTGAGGTTCTTCTTACGGAGATTGGTTCGCGTTTTGTTACTCTTCCAGAGGAAAGAC TTCTTGCAGTTGTTAACGCCCTGCTTCATCGCTGTTACAAGTACCCAACTGCTACCACAGCTGAGGTCCCTCAATCCCTCAAGAAGGAACTCTCTGGCGT TTGCAGGGCTTGCTTTTCTGCTGATGCCGTGAACAAACATGTTGATTTTGTGAGAGAGTACAAACAAGATTTTGAACGTGATCTTGATCCAGAAAGTACA TCTACTTTCCCTGGAACACTCTCAGAACTGACTGAGAGATTGAAACACTGGAAAAATGTCCTTCAAAGCAATGTGGAGGACCGTTTTCCAGCTGTCTTGA AGCTCGAGGAAGAAAGTAGGGTCTTGCGCGACTTCCATGTTGTTGATGTAGAGGTTCCTGGACAGTATTTCAGTGATCAGGAAGTTGCACCAGATCATAC AGTTAAGCTGGATAGGGTTGGAGCTGACATACCAATTGTTAGAAGGCATGGCAGCAGCTTCCGTCGTCTGACTCTGATGGGATCAGATGGTTCTCAGCGT CATTTTATCGTCCAAACTTCGCTGACCCCTAATGCAAGGAGTGATGAACGTATGCTGCAACTATTCCGTGTAATGAACCAGATGTTTGACAAGCACAAGG AGTCAAGACGTCGGCACATATCCATTCATACTCCGATCATCATTCCTGTTTGGTCCCAGGTGCGGATGGTCGAAGATGATGTTATGTACAGCACTTTCTT AGAGGTGTACGAAAACCATTGTGCAAGAAATGACCGAGAAGCTGATCTCCCAATTACATATTTCAAGGAGCAACTGAACCAGGCCATATCTGGCCAAGTT TCTCCTGAAGCTATAGTAGATCTCCGCCTCCAAGCGTATAGTGACATAACAAAGAACTTGGTGACTGACAGCATCTTTTCCCAGTACATGTACAAGACTC TACCGAGTGGTAACCATATGTGGGCTTTCAAGAAGCAATTCGCCACACAGTTGGCTCTTTCAAGTTTCATGTCCTACATGCTGCAAATTGGGGGCCGGTC TCCGAACAAGATACTATTTGCCAAGAACACGGGCAAGATATTCCAGACAGATTTTCACCCAACGTATGATGCCAATGGACTGGTGGAGTTCACGGAACCG GTACCCTTTCGGCTGACTAGAAACATGCAAGCATTTTTCTCGCATTTTGGCGTTGAAGGTCTTATAGTGTCTTCAATGTGTGCTGCTGCACAAGCTTTGG TCTCTCCGAAGCAAAGTCAACACTTGTGGCACCAGTTAGCTATGTTTTTCCGCGACGAGCTGGTGTCTTGGTCGTGGAGAAGGCCTCATGGGGTACCTAT TCCAGCGGCAGGAGGCTCTGGTACGAATCCTGTAGATTTCAAGCTCAAGGTGACAAGCAACGTGGTCCTTGTCATCAACCGGATCAATGACATAGCTCCA CAGTTCCTCTCAGAAGAGGAGGACAACACGATGGATCCGCCACAGTCGGTGCAGAGGGGAGTGAATGAGTTGGTTGAGGCGGCCCTTACGCCGAGGAACT TGTGTATGATGGATCCAACTTGGCATCCATGGTTCTAA
AA sequence Show only first row Show all	>Lus10041911 pacid=23146720 polypeptide=Lus10041911 locus=Lus10041911.g ID=Lus10041911.BGIv1.0 annot-version=v1.0 MEALRTKHTNLASELEVLLTEIGSRFVTLPEERLLAVVNALLHRCYKYPTATTAEVPQSLKKELSGVCRACFSADAVNKHVDFVREYKQDFERDLDPEST STFPGTLSELTERLKHWKNVLQSNVEDRFPAVLKLEEESRVLRDFHVVDVEVPGQYFSDQEVAPDHTVKLDRVGADIPIVRRHGSSFRRLTLMGSDGSQR HFIVQTSLTPNARSDERMLQLFRVMNQMFDKHKESRRRHISIHTPIIIPVWSQVRMVEDDVMYSTFLEVYENHCARNDREADLPITYFKEQLNQAISGQV SPEAIVDLRLQAYSDITKNLVTDSIFSQYMYKTLPSGNHMWAFKKQFATQLALSSFMSYMLQIGGRSPNKILFAKNTGKIFQTDFHPTYDANGLVEFTEP VPFRLTRNMQAFFSHFGVEGLIVSSMCAAAQALVSPKQSQHLWHQLAMFFRDELVSWSWRRPHGVPIPAAGGSGTNPVDFKLKVTSNVVLVINRINDIAP QFLSEEEDNTMDPPQSVQRGVNELVEAALTPRNLCMMDPTWHPWF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041911 [exp]	0	1
AT1G59077			unknown protein		Lus10022089 [exp]	1.4	0.8780
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	7.1	0.8379
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	11.8	0.8765
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	15.7	0.8699
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	16.4	0.8353
AT1G10380			Putative membrane lipoprotein ...		Lus10037078 [exp]	17.3	0.7904
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	18.8	0.8612
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	19.8	0.8696
AT1G09050			unknown protein		Lus10037506 [exp]	21.2	0.8669
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	21.6	0.8520

Compare expression of checked genes

Lus10041911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.