Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51240 578 / 0 TT6, F3'H, F3H TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) AT4G10490 206 / 4e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 202 / 9e-62 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 200 / 6e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 199 / 1e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 199 / 3e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G11180 199 / 6e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 194 / 1e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 194 / 2e-58 ATJRG21 jasmonate-regulated gene 21 (.1) AT1G78550 186 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041913 [exp] 593 / 0 AT3G51240 602 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Lus10015573 [exp] 208 / 4e-64 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 206 / 5e-63 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 202 / 3e-61 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030185 [exp] 200 / 5e-61 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 200 / 6e-61 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 200 / 2e-60 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004387 [exp] 192 / 2e-57 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10024882 [exp] 185 / 2e-55 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113900 [exp] 593 / 0 AT3G51240 598 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Potri.005G113700 [exp] 584 / 0 AT3G51240 590 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Potri.011G150100 [exp] 228 / 8e-72 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 221 / 6e-69 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 211 / 2e-65 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 209 / 3e-64 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 207 / 9e-64 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 207 / 1e-63 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 207 / 2e-63 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 204 / 2e-62 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10041912 pacid=23147020 polypeptide=Lus10041912 locus=Lus10041912.g ID=Lus10041912.BGIv1.0 annot-version=v1.0 ATGGTTTCGGCGAGGTCGGTCATAATGGAGAAGCCGCAGCCGGCGAAGAAAACGCTGTCGGAAGAAGAGAAGACGGTGGAGCCAAGCTTCATCCGCGACG TAGACGAGCGTCCCAAAGTCGCTTACAACCACTTCAGCAACGACATCCCCGTCATCTCCCTCGCCGGGATCGACGACGTCAACTGCAGAGCCGAGGTCTG CAGCAAGATCGTCGAGGCCTGCGAGGAGTGGGGCATCTTTCAGGTCGTCGATCATGGGGTTGACGCTGATCTCATCTCCGACATGACTCATCTCGCTCGC CAGTTTTTCGCCTTGCCGCCTGAGGAGAAGCTCCGTTTTGATATGTCCGGCGGCAAGAAAGGCGGATTCATCGTCTCCAGCCATTTGCAGGGAGAAGCGG TGCAGGATTGGCGGGAGATAGTAACGTACTTTTCGTATCCAGTCCGCCAACGGGACTACTCACGGTGGCCGGACAAGCCGGAGGCATGGAGGGCGGTGAC GGAGGAATACAGCGAGAAGCTGATGGGACTAGCATGCAGACTGTTGGAGGTTTTGTCCGAAGCTATGGGGCTAGAGAAGGAAGCGTTGACCAAAGCATGC GTTGACATGGACCAAAAAGTAGTTGTTAATTTCTACCCAAAATGCCCTCAGCCTGATCTCATCCTCGGTCTCAAGCGTCACACTGATCCAGGCACCATCA CGCTCTTGCTTCAGGACCAGGTCGGCGGCCTCCAAGCTACAAGAGATAACGGCAAAACTTGGATTACCGTTAAGCCCGTTGACGGCGCCTTCGTGGTCAA CCTCGGAGACCATGGCCACTTTCTGAGCAACGGAAGGTTCAGGAACGCGGACCACCAGGCGGTGGTGAACTCGAACTCGAGCAGGCTGTCGATAGCGACG TTCCAGAATCCGGCACCAGAGGCAAAGGTGTACCCGCTGAAGATAAGGGAAGGGGAGAAGGCGGTGATGGAGGAGGCAATAACGTTCATGGAGATGTACA AGAGGAAGATGAGCGGGGACATTGAGCTCGCCAGGCTTAAGAAGCTTGCCAAGGAGAAGCTCAAGGAAATGGAAGCTGCTGATGTGGAAGCCGAGGCTGC TAAACTTGAGATCAAGGCCAAACTTGAAGCCAAGCCTTTGGACCAGATTCTCGCCTAA
AA sequence Show only first row Show all	>Lus10041912 pacid=23147020 polypeptide=Lus10041912 locus=Lus10041912.g ID=Lus10041912.BGIv1.0 annot-version=v1.0 MVSARSVIMEKPQPAKKTLSEEEKTVEPSFIRDVDERPKVAYNHFSNDIPVISLAGIDDVNCRAEVCSKIVEACEEWGIFQVVDHGVDADLISDMTHLAR QFFALPPEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRQRDYSRWPDKPEAWRAVTEEYSEKLMGLACRLLEVLSEAMGLEKEALTKAC VDMDQKVVVNFYPKCPQPDLILGLKRHTDPGTITLLLQDQVGGLQATRDNGKTWITVKPVDGAFVVNLGDHGHFLSNGRFRNADHQAVVNSNSSRLSIAT FQNPAPEAKVYPLKIREGEKAVMEEAITFMEMYKRKMSGDIELARLKKLAKEKLKEMEAADVEAEAAKLEIKAKLEAKPLDQILA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041912 [exp]	0	1
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	3.2	0.9794
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	4.5	0.9794
					Lus10006529 [exp]	5.5	0.9794
					Lus10035557 [exp]	6.3	0.9794
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	7.1	0.9794
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10023670 [exp]	7.5	0.9060
					Lus10013260 [exp]	7.7	0.9794
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	8.4	0.9794
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	8.9	0.9794
					Lus10005297 [exp]	9.5	0.9794

Compare expression of checked genes

Lus10041912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.