Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51240 602 / 0 TT6, F3'H, F3H TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) AT5G24530 205 / 2e-63 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 204 / 4e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 203 / 2e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10500 202 / 2e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 200 / 8e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 196 / 1e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 194 / 7e-59 ATJRG21 jasmonate-regulated gene 21 (.1) AT5G05600 187 / 2e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 181 / 6e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041912 [exp] 602 / 0 AT3G51240 603 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Lus10015573 [exp] 218 / 2e-68 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 214 / 8e-67 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 205 / 2e-63 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 200 / 3e-61 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 199 / 2e-60 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005037 [exp] 198 / 3e-60 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004387 [exp] 196 / 1e-59 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10024882 [exp] 189 / 4e-57 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113900 [exp] 600 / 0 AT3G51240 598 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Potri.005G113700 [exp] 589 / 0 AT3G51240 590 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Potri.015G002800 [exp] 225 / 2e-71 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 224 / 7e-71 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 224 / 7e-71 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 224 / 1e-70 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 206 / 2e-63 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 204 / 5e-63 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 204 / 8e-63 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 200 / 3e-61 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10041913 pacid=23146633 polypeptide=Lus10041913 locus=Lus10041913.g ID=Lus10041913.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCAAAGACATTAACGGGTCTGGCAGAAGAGAGGACGTTGGGGGCTACCTTCATCCGCGACGAAGATGAGCGCCCGAAAGTTGCTTACAATC AATTCAGCGACGAAATCCCCGTCATTTCCCTTGCCGATATTACCAACAACCGCCAGCAGGTTTGTGACAAGATCGTCAAGGCCTGCGAAGATTGGGGCAT TTTTCAGGTGGTGGATCATGGCATTGACCCCAACCTTGTATCCGACATGGCCCGCCTTGCTCGCGACTTTTTCGCTCTGCCGCCGGAGGAGAAGCTCCGG TTTGATATGTCCGGCGGCAAGAAAGGCGGCTTCATCGTATCCAGCCATTTGCAGGGAGAAGCGGTGCAAGATTGGCGTGAGATAGTAACCTACTTCTCGT ATCCAATCCGACAACGGGACTACTCACGGTGGCCGGACAAGCCGGAGGCGTGGAGGGCGGTGACGGAGGAATACAGCGAGAAGCTGATGGGACTAGCATG CAAACTCCTGGAGGTTTTGTCGGAAGCCATGGGCCTAGAGAAGGAAGCGTTGGCCAAAGCATGTGTTGACATGGACCAAAAAGTAGTTGTCAATTTCTAC CCAAAATGCCCTCAGCCTGATCTCACCCTCGGTGTCAAGCGTCACACGGATCCAGGCACCATCACGCTCTTGCTCCAAGACCAGGTCGGCGGCCTCCAAG CCACGAGGGATAACGGCAAGACCTGGATCACCGTTAAACCCATTGACGGCGCTTTCGTCGTTAACCTCGGAGACCATTGCCACTTTCTAAGCAATGGGAG GTTTAGGAACGCGGACCATCAGGCGGTGGTGAACTCGAACTCAAGCAGGCTGTCGATAGCGACGTTCCAGAATCCGGCGCCGGAGGCAAAGGTGTATCCG TTGAAGATAAGGGATGGGGAGAAAGGGATAATGGAGGAAGCAACCACGTTTGGTGAGATGTATAAGAGAAAGATGAGCAGGGACGTTGAGCTTGCTAGGC TAAAGAAGTTGGCTAAGGAAACGGCTGATAAGGAGAAGGCTTGA
AA sequence Show only first row Show all	>Lus10041913 pacid=23146633 polypeptide=Lus10041913 locus=Lus10041913.g ID=Lus10041913.BGIv1.0 annot-version=v1.0 MAPPKTLTGLAEERTLGATFIRDEDERPKVAYNQFSDEIPVISLADITNNRQQVCDKIVKACEDWGIFQVVDHGIDPNLVSDMARLARDFFALPPEEKLR FDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIRQRDYSRWPDKPEAWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALAKACVDMDQKVVVNFY PKCPQPDLTLGVKRHTDPGTITLLLQDQVGGLQATRDNGKTWITVKPIDGAFVVNLGDHCHFLSNGRFRNADHQAVVNSNSSRLSIATFQNPAPEAKVYP LKIRDGEKGIMEEATTFGEMYKRKMSRDVELARLKKLAKETADKEKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	0	1
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10027843 [exp]	1.0	0.9610
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	2.4	0.8883
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	8.3	0.8395
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006352 [exp]	10.2	0.7761
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	12.6	0.7506
					Lus10016118 [exp]	13.0	0.7506
					Lus10026491 [exp]	13.4	0.6948
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	17.0	0.7199
AT1G51940			protein kinase family protein ...		Lus10026689 [exp]	19.9	0.6761
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	19.9	0.6855

Compare expression of checked genes

Lus10041913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.