Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66210 864 / 0 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4) AT2G17890 861 / 0 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 825 / 0 CPK18 calcium-dependent protein kinase 18 (.1.2) AT3G50530 464 / 8e-158 CRK CDPK-related kinase (.1.2) AT1G49580 443 / 1e-149 Calcium-dependent protein kinase (CDPK) family protein (.1) AT5G19360 440 / 3e-149 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 437 / 4e-148 CPK17 calcium-dependent protein kinase 17 (.1) AT3G56760 438 / 5e-148 Protein kinase superfamily protein (.1) AT2G41140 438 / 6e-148 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT1G50700 436 / 6e-148 CPK33 calcium-dependent protein kinase 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028459 [exp] 997 / 0 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10002966 [exp] 469 / 6e-159 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 446 / 1e-150 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10017537 [exp] 437 / 2e-149 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10008875 [exp] 442 / 8e-149 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10008958 [exp] 430 / 5e-146 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10032640 [exp] 431 / 7e-146 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10028862 [exp] 433 / 1e-145 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10038460 [exp] 431 / 1e-145 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057600 [exp] 923 / 0 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4) Potri.005G113600 [exp] 920 / 0 AT5G66210 870 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4) Potri.005G135900 [exp] 469 / 8e-160 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 467 / 9e-159 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.004G143700 [exp] 454 / 4e-154 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 445 / 2e-150 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.012G023300 [exp] 443 / 2e-149 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.009G105700 [exp] 439 / 4e-148 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.010G244800 [exp] 436 / 5e-147 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G040500 [exp] 435 / 5e-147 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10041914 pacid=23146976 polypeptide=Lus10041914 locus=Lus10041914.g ID=Lus10041914.BGIv1.0 annot-version=v1.0 ATGGGGCTTTGCTTCTCCACATCCAAGGTCAGTGGCTCCACCAGTAACAACAACAACAACGCCACAGCTGCTGCAGGTGGCGCGACCCGGGGGGCGGCGG CGGCTACGAACCATAAAGAGAGTACGTCGGCGTCGGCGGCGGCGACGGCGACAAACACTACTAATATTAAGAATGACCCAAATGAGAAGAAGGCCAGTAA GAAGCCGCAGCAGGAACAGCAGCCGGTGAAGTTGAAAGGGAAGATGGGATCGAGGAGGGGTAGTGGGACGGTTCCTTGTGGGAAAAGGACGGATTTTGGA TACGATAAGGATTTCAATAAGCGGTATACGATTGGGAAACTGTTGGGTCATGGCCAATTTGGGTATACGTATGTTGCTACTGATAAAGGTAATGGAGATC GTGTTGCCGTCAAGCGGATTGACAAAGGCAAGATGATCCTTCCTATTGCTGTTGAAGACGTCAAAAGAGAAGTGAAGATTTTGCGGCAACTTGCAGGGCA CGAGAACGTGGTTCACTTTTTTAATGCGTTCGAGGATGATTCATATGTTTTTATAGTTATGGAGTTATGTGAAGGTGGGGAACTGCTAGACCGAATACTA GCCAAAAAGGACAGCCGGTATAGTGAGAAAGATGCAGCAGTAATTGTACGGCAGATGCTCAAAGTAGCAGCGGAATGCCATTTACACGGTTTAGTCCACC GTGATATGAAACCCGAGAATTTTCTTTTCAAGTCGACAAAAGAGGACTCAGCTCTGAAAGCTACAGATTTTGGGTTGTCAGACTACATAAAGCCAGGAAA GAAGTTCCATGACATTGTTGGCAGTGCTTATTATGTTGCTCCAGAAGTCTTACAACGGAAGTCTGGACCTGAATCAGATGTCTGGAGCATTGGTGTTATT ACATATATTTTGCTCTGTGGAAGGCGGCCCTTTTGGGATAAGACTGAGGATGGCATATTCAAGGAGGTCTTAAGAAACAAACCTGATTTCCGCCGCAAAC CATGGCCAACTATCAGCAACAGTGCCAAAGATTTCATAAGGAAGTTGCTTGTGAAGGATCCTCGTGCTAGACTCACTGCCGCTCAAGCTCTTTCACATCC ATGGGTGCGAGAAGGAGGAGATGCATCCGAGATCCCAATTGACATTTCTGTTCTGAAGAACATGAGGCAATTTGTAAAGTATAGCCGCTTGAAACAGTTT GCTCTCAGGGCATTAGCTAGCACAATAAACGAAGAGGAGCTAGCTGATCTCAAGGATCAATTCGATGCAATTGACATCGATAAAAATGGTTCTATCAGTC TTGAAGAGATGAGGCAGGCACTTGCCAAAGATCTTCCTTGGAAGTTGAAAGAGTCCCGTGTTCTAGAAATTCTTCAAGCAATCGACAGTAACACAGACGG ACTAGTCGATTTCCCCGAGTTTGTGGCAGCTGCTCTGCATGTGCATCAGTTGCAAGAACACAACTCTGAGAAGTGGGAGGAACGTTCTCAGGCTGCTTTC GACAAATTTGACATCGACGGAGATGGTTATATAACCCCTGATGAGCTTAGAATGCACACTGGCTTAAGGGGCTCAATTGACCCAGTTCTGGAGGAAGCAG ATATTGACAAAGACGGCAAAATAAGTCTTTCGGAGTTCCGCAGACTTCTAAGAACTGCAAGCATGGGATCAAGAACTTTGCCAAGTCCATCCGGCCACCG CAATTCTCGGAGACTCTAA
AA sequence Show only first row Show all	>Lus10041914 pacid=23146976 polypeptide=Lus10041914 locus=Lus10041914.g ID=Lus10041914.BGIv1.0 annot-version=v1.0 MGLCFSTSKVSGSTSNNNNNATAAAGGATRGAAAATNHKESTSASAAATATNTTNIKNDPNEKKASKKPQQEQQPVKLKGKMGSRRGSGTVPCGKRTDFG YDKDFNKRYTIGKLLGHGQFGYTYVATDKGNGDRVAVKRIDKGKMILPIAVEDVKREVKILRQLAGHENVVHFFNAFEDDSYVFIVMELCEGGELLDRIL AKKDSRYSEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSALKATDFGLSDYIKPGKKFHDIVGSAYYVAPEVLQRKSGPESDVWSIGVI TYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNSAKDFIRKLLVKDPRARLTAAQALSHPWVREGGDASEIPIDISVLKNMRQFVKYSRLKQF ALRALASTINEEELADLKDQFDAIDIDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFPEFVAAALHVHQLQEHNSEKWEERSQAAF DKFDIDGDGYITPDELRMHTGLRGSIDPVLEEADIDKDGKISLSEFRRLLRTASMGSRTLPSPSGHRNSRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	0	1
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	1.4	0.9693
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	2.0	0.9579
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	3.5	0.9495
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	3.5	0.9438
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	4.2	0.9124
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	4.5	0.9137
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	4.6	0.9120
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10021531 [exp]	8.7	0.8869
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	9.4	0.9086
					Lus10008302 [exp]	9.8	0.8909

Compare expression of checked genes

Lus10041914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.