Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025963 [exp] 57 / 2e-11 ND / Lus10028460 [exp] 51 / 2e-09 ND / Lus10014263 [exp] 48 / 6e-08 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114500 [exp] 65 / 3e-14 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041915 pacid=23146823 polypeptide=Lus10041915 locus=Lus10041915.g ID=Lus10041915.BGIv1.0 annot-version=v1.0 ATGGATACATCATCGCCGCCGCCGTCACCACTGTCACCGAGCCCAAGGAGGAGGAGAACCAACAAAACCGCAATTCTCTGCCTCCCTAGCCTCAGATCAT CGGAAGGACGCGGTGGCTCAGCCAAGAGCCACCACCGCGTGCCCCCCACGTCCCTTCTAGAACGTTTCCGCGGAGCCGTCTTCCGCCTCATGATGATCTC CGCTCTTTCCAACTCCTCCTCGTCATCTGTCCCCACCACTCACTCCTCGCCACGTGTCAAGACGAGGGTAAAGAGTAGCAGGCAGCCGCCGCCTTCTGAT AATTACCACCGCCGCCGCCTTGCTAATCATGAGGATTCTCACCACAGCGAAGCTGTGGCGGATTGCATCGAGTTCATCAAGAAGACATCCGCAGCCGATG TCCGCAGCCGACGATGA
AA sequence Show only first row Show all	>Lus10041915 pacid=23146823 polypeptide=Lus10041915 locus=Lus10041915.g ID=Lus10041915.BGIv1.0 annot-version=v1.0 MDTSSPPPSPLSPSPRRRRTNKTAILCLPSLRSSEGRGGSAKSHHRVPPTSLLERFRGAVFRLMMISALSNSSSSSVPTTHSSPRVKTRVKSSRQPPPSD NYHRRRLANHEDSHHSEAVADCIEFIKKTSAADVRSRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041915 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	2.0	0.9391
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	3.3	0.9265
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	3.5	0.9363
AT4G12010			Disease resistance protein (TI...		Lus10028058 [exp]	4.6	0.9326
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	6.0	0.9368
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	8.0	0.9313
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	8.7	0.9354
AT5G60700			glycosyltransferase family pro...		Lus10041317 [exp]	8.8	0.9335
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10009939 [exp]	12.5	0.9137
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10002841 [exp]	16.5	0.9196

Compare expression of checked genes

Lus10041915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.