Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51220 82 / 9e-19 Plant protein of unknown function (DUF827) (.1) AT2G17940 79 / 2e-17 Plant protein of unknown function (DUF827) (.1) AT1G75720 64 / 3e-12 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028461 [exp] 403 / 2e-143 AT2G17940 104 / 3e-27 Plant protein of unknown function (DUF827) (.1) Lus10024335 [exp] 76 / 2e-16 AT1G75720 117 / 8e-33 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10016626 [exp] 44 / 0.0001 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 44 / 0.0001 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114400 [exp] 166 / 4e-51 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1) Potri.002G023000 [exp] 101 / 5e-26 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G238500 [exp] 95 / 2e-23 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.004G222800 [exp] 43 / 8e-05 AT1G58070 60 / 1e-10 unknown protein Potri.001G369200 [exp] 44 / 0.0001 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.003G009400 [exp] 42 / 0.0002 AT1G58070 48 / 1e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041916 pacid=23146761 polypeptide=Lus10041916 locus=Lus10041916.g ID=Lus10041916.BGIv1.0 annot-version=v1.0 ATGCAAAGAGAAGAAGGTTGTGTGGCGGTGATGGGTCGAGCAGAGATCGATACTCGAGCCCCCTTCAGTTCTGTTAGAGAGGCTGTTATGTTGTTCGGCG AAAAAGTTTTGGCCGGTGAAATTTACTTCAACAAGCTCAAAGAAATTAAGGAAGAAAGTGAAAGCCGCAACGCGGCAAGGCCGCGCGTGGAAGCGGTGAC GGCGGAGCTGGAAGAAACAAAGCTGAGTCTGAAGAAGGCCAAAGAGGAAGGCAACTTGATGTCCTACCGAATCAAGTCCTTACGAGAGGAGCTCGAGCTA ACCAAGAAGGAGCTCACCCAGATTAAAACCCACCAAAAATACCAACAACACCACGCGCCGCCGCATCCAGCCGCCTCCGACGACTCCGAGATCGAGGTGG AGGATCTCAAGTTCATCGAAACATCATCCAAGCTCAACAACCTTTTCGTCAACAGGAAGGCAGTCGACAATGACGACGACGACGACGATGATGATGAGCG GTCAGAGGATTTTGATCGGAAGAAGAGGCCGTACGTGAAGTTCGCCAGCCCGCCTTCCTTGGCGAAAGTGATTGTGACAAGAGAAGAAATTATGATGCGG CCGCAGAGGTCGACGTCGTCGCCTCATGTTGCTACGGGATCGTCTTACGGGAAGAAGAGCCACCAGCCTGCGGCTGCGGCGGCGAGGAGACGGTCGATTC TGCCGGTGTTGGGCTGGCTGTTTAATAAGAAGAAGGGAGGCCCAGCCCACTCGGCGGATCACGTTGGCGGGAGTTATGGTCAACCACAGCGAAACTGA
AA sequence Show only first row Show all	>Lus10041916 pacid=23146761 polypeptide=Lus10041916 locus=Lus10041916.g ID=Lus10041916.BGIv1.0 annot-version=v1.0 MQREEGCVAVMGRAEIDTRAPFSSVREAVMLFGEKVLAGEIYFNKLKEIKEESESRNAARPRVEAVTAELEETKLSLKKAKEEGNLMSYRIKSLREELEL TKKELTQIKTHQKYQQHHAPPHPAASDDSEIEVEDLKFIETSSKLNNLFVNRKAVDNDDDDDDDDERSEDFDRKKRPYVKFASPPSLAKVIVTREEIMMR PQRSTSSPHVATGSSYGKKSHQPAAAAARRRSILPVLGWLFNKKKGGPAHSADHVGGSYGQPQRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	0	1
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10041106 [exp]	1.4	0.9863
AT1G67510			Leucine-rich repeat protein ki...		Lus10015799 [exp]	2.8	0.9807
AT5G61340			unknown protein		Lus10034727 [exp]	3.0	0.9840
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	4.0	0.9821
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	4.2	0.9844
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	5.5	0.9816
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	5.9	0.9647
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	6.3	0.9785
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	6.7	0.9785
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	7.2	0.9706

Compare expression of checked genes

Lus10041916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.