Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17970 547 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G36090 512 / 6e-179 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT1G48980 398 / 5e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein AT2G48080 131 / 2e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 122 / 1e-29 hydroxyproline-rich glycoprotein family protein (.1.2) AT4G02940 119 / 2e-28 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028462 [exp] 903 / 0 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 258 / 3e-83 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10029637 [exp] 120 / 7e-29 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10027990 [exp] 115 / 3e-27 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 115 / 4e-27 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 112 / 3e-26 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10028671 [exp] 72 / 5e-13 AT4G36090 75 / 5e-14 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114800 [exp] 563 / 0 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 516 / 1e-180 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.010G102100 [exp] 144 / 8e-37 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.008G138900 [exp] 141 / 1e-35 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.014G137700 [exp] 106 / 2e-24 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10041917 pacid=23146798 polypeptide=Lus10041917 locus=Lus10041917.g ID=Lus10041917.BGIv1.0 annot-version=v1.0 ATGTCTCACAAGAACGGAGAAAAAAACGGCGACCCTTTCCTCCATCAGTACCAGCCTGAGGATCTCCGAATCGCGTCGGAATTCCTCAACAATTGGCTCC CTTTTCTCTCCAAAGGTCTCTGCAACGGCTGCTCCCAATCTCTCTCGGATCGCATCCGTTCTCTCGACCCAAAATTCAGTGGTTCGCCCGAGCAATTACG ATCGGAGAAATCCCCTGTCTCTTCAATTGCGGAGTCTTGTGGGCACGTCGTGGAAGATCACAATGATGAAGATTTCGATAAGAATTCGTTGGGTAGTTGG AATGATGGGGCTCATGGAAGTTCCGATTCAGTTCCTGGGGATACCGCTAGGGGGTTGCTTGGTCCGCCGCCGGGAACTGAAACCTCGGGAAATCGGATGT CGTGGGCAGATATGGCGCAGCAAGAGGATGATGAGCTTGAGGATGAAGAAGATCACTTGCGTTCAAGCGTTGATAGTACTCCTCTGGTAGCGAAGGCTGT GGGGAAGCCTCAGTTGTCGAGGGAGAAAAGAGAGTATCTCCGGTTTATGAATGTGCAGAGGAAGAAGGATTTCATTTGCTTCGAGAGGGTTCGTGGGAAA TTGGTAAACATCCTTGAAGGACTTGAACTTCATTCTGGTGTTTTCAGTGCGGCCGAGCAGAAGAGGATAGTCGATCACGTTTTCGAACTTAAAGAGAAGG GCATGAGAGGAGAGTTGAAAGATCGCACATTAACAGCGCCTCAGAAGTGGATGAGAGGCAAAGGGAGGGTCACTCTGCAATTTGGATGCTGCTATAATTA TGCAACCGATAAGAATGGTAACCCACCTGGCATACTGAAAAATGAACTGGTGGATCCTATACCTCACCTTTTCAAAGTCATAATAAGAAGATTGATCAAA TGGCATGTTCTGCCTCCCACCTGCGTACCGGACAGTTGTATTGTCAACATTTACGACGAAGGAGACTGCATACCGCCTCACATTGACAACCATGATTTCC TACGGCCATTCTGCACCGTATCTTTCGTTAGCGAGTGCAATATATTGTTCGGGACCAATTTAAAAATCGTTGGTCCTGGCGAGTTCTCCGGCTCCATGCC GATTCCTTTGCCTGTCGGCTCTGTGCTTGTACTAAATGGAAACGGAGCTGATATAGCTAAACATTGTGTGCCATCAGTCCCAACAAAAAGAATATCCATC ACGTTCAGAAAGATGGATGACAAAAAATGGCCTGCTGGGTTTGTTCCGGAGCCTGATCTGCTGGGAATTCAGCCGTTAGAGTTTGAAGCAGACAAGACTA TAAATCAGTCGAACTCACCGAAATCTGAGCCGTACAAAAGATGGCAGCCATTAGAGACAGAAGGTAATAAGATGGATTTCAGAAGAGCAGTCTCCTCAGA GCCCCGAAATGCCAATCGAGGTAGGGGAAGGGGAAGGGTTAGGCAGGGTCCTCGCCAGAAGGTGACGTTGGGTTCTGAGAATTGGTAA
AA sequence Show only first row Show all	>Lus10041917 pacid=23146798 polypeptide=Lus10041917 locus=Lus10041917.g ID=Lus10041917.BGIv1.0 annot-version=v1.0 MSHKNGEKNGDPFLHQYQPEDLRIASEFLNNWLPFLSKGLCNGCSQSLSDRIRSLDPKFSGSPEQLRSEKSPVSSIAESCGHVVEDHNDEDFDKNSLGSW NDGAHGSSDSVPGDTARGLLGPPPGTETSGNRMSWADMAQQEDDELEDEEDHLRSSVDSTPLVAKAVGKPQLSREKREYLRFMNVQRKKDFICFERVRGK LVNILEGLELHSGVFSAAEQKRIVDHVFELKEKGMRGELKDRTLTAPQKWMRGKGRVTLQFGCCYNYATDKNGNPPGILKNELVDPIPHLFKVIIRRLIK WHVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTVSFVSECNILFGTNLKIVGPGEFSGSMPIPLPVGSVLVLNGNGADIAKHCVPSVPTKRISI TFRKMDDKKWPAGFVPEPDLLGIQPLEFEADKTINQSNSPKSEPYKRWQPLETEGNKMDFRRAVSSEPRNANRGRGRGRVRQGPRQKVTLGSENW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	0	1
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	1.7	0.8992
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	2.0	0.8899
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	2.4	0.9006
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	3.5	0.9006
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	5.0	0.8787
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	5.1	0.8463
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	5.3	0.8556
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	6.5	0.8306
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	6.7	0.8491
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	6.9	0.8532

Compare expression of checked genes

Lus10041917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.