Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17990 334 / 3e-114 unknown protein AT5G66250 314 / 6e-107 kinectin-related (.1.2.3.4) AT4G36105 184 / 5e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028465 [exp] 586 / 0 AT2G17990 312 / 6e-105 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G115500 [exp] 433 / 2e-153 AT2G17990 385 / 6e-134 unknown protein Potri.007G012600 [exp] 426 / 2e-150 AT2G17990 380 / 6e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041920 pacid=23146878 polypeptide=Lus10041920 locus=Lus10041920.g ID=Lus10041920.BGIv1.0 annot-version=v1.0 ATGGCTGCGGAAAATAGTGATCTGCTGAATTTGAAATCTCAGCTGAGCGAAACTAACGAAACATGGATTCACGAAATGGAACGACAGCAACACCAAGTTA CTACTTTACAGGAAAAGCTCATGGAGGTAACAGCTTCAATACAGGAATCTAAAGAAGGTGGGAAGAAAGAGTTGGATGTTCTTAGGCGAAGGGTGAAAAC CACAGCAACGTTATTGACTTATTTGAAATCAAAGGCACGCGTCATGGCCCTTCCGGATTTTTCTCAGACATCATACCCCATTGAAGAATTAGAAGGCGTT GCCGATGAAGATACTTGTTCTAAACTCGAAACACGGCAAGACAGCCATGACCAGAAAGACGAAGCTGCTTATATTGGGGAAATGCTCAAGTCCATACATA TGGTAACGGATGTAATGGAAACTCTTGTGAAAAGGGTTGTGCTTGCAGAATCGGAAACTGCGATGGAGAAGGAGAAAGTATGCATAGGTCAGGAGGAAAT TAGGAAGAAGGCAGTTCAAATTGAGAACATGTCGACCAAACTAGAAAAAATGGAAACTTTTGCAATGGGTACTAAAGCTATTCTGGACGATATGAAGCAG AGGATCGAGGATCTGGTGGAAGAGATAACTCGACAGACGCATCGAGCTGAAGAAAACGAACAGGAGCTTTCTCGGGTGAAGAGGGACTTTGAGTCGTTGA AAGCTTATGTGAGCAGTCTGATGAATGTGAGAGAGACGCTTGTTTCGTCTGAGAAGCAGTTTCAGACCATGGAGAGGCTTTTCGAACGATTGGTGGCGAA AACAACACAATTGGAAGGGGAGAAAATGCAGAAAGAGAGTGAAGTTCAGAAACTTATGGAAGAGAACGTGAAGTTAACTGCTCAACTGGACAAGAAAGAA GCTCAGCTGCTGGCCATGAATGAACAATGCAAGGTAATGGCACTCGGCTTCTCGAATGTATAA
AA sequence Show only first row Show all	>Lus10041920 pacid=23146878 polypeptide=Lus10041920 locus=Lus10041920.g ID=Lus10041920.BGIv1.0 annot-version=v1.0 MAAENSDLLNLKSQLSETNETWIHEMERQQHQVTTLQEKLMEVTASIQESKEGGKKELDVLRRRVKTTATLLTYLKSKARVMALPDFSQTSYPIEELEGV ADEDTCSKLETRQDSHDQKDEAAYIGEMLKSIHMVTDVMETLVKRVVLAESETAMEKEKVCIGQEEIRKKAVQIENMSTKLEKMETFAMGTKAILDDMKQ RIEDLVEEITRQTHRAEENEQELSRVKRDFESLKAYVSSLMNVRETLVSSEKQFQTMERLFERLVAKTTQLEGEKMQKESEVQKLMEENVKLTAQLDKKE AQLLAMNEQCKVMALGFSNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17990			unknown protein		Lus10041920 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	2.4	0.9288
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	2.6	0.9429
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	5.3	0.9144
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	5.5	0.9270
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	7.2	0.9093
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10002994 [exp]	7.7	0.9029
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	7.7	0.9179
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	8.2	0.9222
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10012825 [exp]	10.1	0.9059
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	12.2	0.9086

Compare expression of checked genes

Lus10041920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.