Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15190 134 / 3e-39 chloroplast 30S ribosomal protein S20, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005538 [exp] 241 / 1e-81 AT3G15190 164 / 2e-51 chloroplast 30S ribosomal protein S20, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G396600 [exp] 154 / 1e-47 AT3G15190 144 / 9e-44 chloroplast 30S ribosomal protein S20, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01649 [flax] [poplar] Ribosomal_S20p Ribosomal protein S20
Representative CDS sequence Show only first row Show all	>Lus10041925 pacid=23153496 polypeptide=Lus10041925 locus=Lus10041925.g ID=Lus10041925.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCAGTGTTATCTTGCTGCTCTTCCCTTACTTCCAGACTCAACAACCTCTCAATCACCGCCATTCCATCCTCTTCTTCTCCTCAATCTCACA ATCCTCTTATTCTCCTCAATCTCACTCCAACCCTTTCCGCTCCATCAAATTCTCTTCTTCCCTCCCCCCCAACAACAATGGCGAGTCCAGTAGCCCTCTG CAATTTCCATTACCCTTTCCGCGGATGTCTGTCGATGACCCAGCGTTCTCTGCGGCGGTCAACGGTGGTCTGCGAGGCTACTCCAGCTGGCAAAAAGGCT GACTCAGCTGCCAAGCGAGCTCGCCAGAACGAGAAACGAAGGATTTACCATAAGGCGCACAAGTCCGAAGTTAGAACTCGGATGAGGAAGGTATTGGAAG CGCTACTTAAGTTGAGAAAGAAGAAGGAAGCAGAACCTGAGGAGGTCCTTCCAGTCGAGACACTAATTGCCGAAGCCTATTCAGTCATCGATAAAGCCGT GAAGGTGGGATCGCTGCATCGGAATACTGGAGCAAGGAGAAAGTCGCGGCTTGCTAGGGGTAAAAGAGCTGTTGCAATTCGCCACGGATGGTACACCCCT TCTTCCACCGATGAATCTGCAGCAGCTTCTACCTAA
AA sequence Show only first row Show all	>Lus10041925 pacid=23153496 polypeptide=Lus10041925 locus=Lus10041925.g ID=Lus10041925.BGIv1.0 annot-version=v1.0 MAAAVLSCCSSLTSRLNNLSITAIPSSSSPQSHNPLILLNLTPTLSAPSNSLLPSPPTTMASPVALCNFHYPFRGCLSMTQRSLRRSTVVCEATPAGKKA DSAAKRARQNEKRRIYHKAHKSEVRTRMRKVLEALLKLRKKKEAEPEEVLPVETLIAEAYSVIDKAVKVGSLHRNTGARRKSRLARGKRAVAIRHGWYTP SSTDESAAAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15190			chloroplast 30S ribosomal prot...		Lus10041925 [exp]	0	1
AT3G12110		ACT11	actin-11 (.1)		Lus10001693 [exp]	1.7	0.9573
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	2.4	0.9618
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	4.5	0.9569
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	6.6	0.9593
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	6.9	0.9526
AT4G29260			HAD superfamily, subfamily III...		Lus10014968 [exp]	7.2	0.9062
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	7.4	0.9536
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	9.9	0.9421
AT4G36390			Methylthiotransferase (.1)		Lus10041793 [exp]	10.4	0.9277
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10013168 [exp]	14.1	0.9384

Compare expression of checked genes

Lus10041925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.