Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18475 340 / 7e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 171 / 8e-49 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 171 / 4e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 167 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 166 / 5e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 167 / 8e-47 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 166 / 8e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 164 / 2e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 163 / 9e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 163 / 2e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005540 [exp] 545 / 0 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 177 / 2e-50 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 176 / 9e-50 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 171 / 4e-48 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021074 [exp] 155 / 1e-44 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042452 [exp] 156 / 3e-44 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 159 / 5e-44 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038974 [exp] 159 / 5e-44 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 158 / 1e-43 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G103600 [exp] 390 / 2e-134 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 179 / 7e-52 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 178 / 2e-51 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 177 / 5e-51 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 176 / 8e-51 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G131400 [exp] 176 / 1e-50 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G047400 [exp] 173 / 3e-50 AT1G63080 341 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 174 / 4e-50 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 171 / 9e-49 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 170 / 3e-48 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041927 pacid=23153953 polypeptide=Lus10041927 locus=Lus10041927.g ID=Lus10041927.BGIv1.0 annot-version=v1.0 ATGAGAAAGTCGAGAACTTCGTATCCGAACTTAATCACGTACTCGACTGTCATGGATGGGCTCTGCGAGCAAGGGAGATTCGAAGAAGCGATTGAGTTGT TCGAGGAGATGGTGTCGAAGGATCAGATCGTACCGGATGCTCTTACTTATAATGTACTGATAAACGGGTTTTGTCGATCAGAGAAAGTCGACCGGGCAAG GAAGATAATGGAGTTCATGAAGAGCAACGGATGCGCTCCGAATTTGTTTAACTATTCTGCTTTGATGAATGGATTTTGCAGGGAAGGAAAGATGAAAGAG GCCGAAGAGGTCTTCAAGGAAATGAAGAGTCAAGGGTTTAAGCTTGATGCAGTTGTCTATACAACATTGATAAATTGCCTATGCAGGGGTGGGAGAACTG ATGATGCCTTAGTATTGCATCAAGAGATGAAGGAAATGGAGTGCAGAGCTGATGTCGTCACGTATAATGTACTGCTACGAGGATTTTCCGAAGAAGGGAG GTTCGGAGATGCTCTAGCGATGCTCAAGAAGGCAATTAGTGAAGGTGTTTATTTGAACAAAGGGAGTTATAGGATTGTCTTGAACTGCTTATGCAAGACG GGTGAACTGGAGAAAGCTTCCGAGCTGTTGCGTATGATGCTTGATAGAGGCCATGTCCCGCATTATGCGACTTCGAACGAGCTGTTGGTGAAACTCTGTG AAGCTGGGAAGGGATATGAAGCTGAGATGACATTAGCAGCCCTGATAGGAACTGGCTTCAAACCGGGAGATGAGTCTTGGACTTGTTTGGTTGAATTGAT CTGCAGAGAAAGGAAGTTGTTGTCGGCTTTCAAACTGCTTGATGAATTGGCTGGAAATGGTAACCCTTGA
AA sequence Show only first row Show all	>Lus10041927 pacid=23153953 polypeptide=Lus10041927 locus=Lus10041927.g ID=Lus10041927.BGIv1.0 annot-version=v1.0 MRKSRTSYPNLITYSTVMDGLCEQGRFEEAIELFEEMVSKDQIVPDALTYNVLINGFCRSEKVDRARKIMEFMKSNGCAPNLFNYSALMNGFCREGKMKE AEEVFKEMKSQGFKLDAVVYTTLINCLCRGGRTDDALVLHQEMKEMECRADVVTYNVLLRGFSEEGRFGDALAMLKKAISEGVYLNKGSYRIVLNCLCKT GELEKASELLRMMLDRGHVPHYATSNELLVKLCEAGKGYEAEMTLAALIGTGFKPGDESWTCLVELICRERKLLSAFKLLDELAGNGNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10041927 [exp]	0	1
AT3G18510			unknown protein		Lus10032475 [exp]	7.5	0.7869
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	14.0	0.7712
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10024346 [exp]	16.9	0.7370
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	18.2	0.7660
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10021327 [exp]	20.1	0.7549
AT3G51940			unknown protein		Lus10039572 [exp]	25.9	0.7773
					Lus10033670 [exp]	27.5	0.7099
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	29.6	0.7626
AT1G02290			unknown protein		Lus10018907 [exp]	36.5	0.7403
AT4G08460			Protein of unknown function (D...		Lus10024758 [exp]	40.5	0.7314

Compare expression of checked genes

Lus10041927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.