Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53850 363 / 5e-123 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005542 [exp] 508 / 0 AT5G53850 402 / 1e-138 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10009198 [exp] 458 / 8e-160 AT5G53850 766 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10015966 [exp] 293 / 1e-99 AT5G53850 223 / 5e-72 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399000 [exp] 431 / 2e-149 AT5G53850 792 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Potri.011G118132 [exp] 407 / 2e-142 AT5G53850 425 / 1e-147 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10041928 pacid=23153511 polypeptide=Lus10041928 locus=Lus10041928.g ID=Lus10041928.BGIv1.0 annot-version=v1.0 ATGGAGACGGCGGCGGTGAAAGTCGGAGTCAACGTCGCTTCACTTTTTGCTTATTTTCCGGAGCCTTACCCTTACAAGCCACCAAAGAATTCCGTCTGTT CTCCTCTGTTTCCCAAGTTCATTTATTCTTCTATACAACCGGGAAGAATTTTCAGGCTGAATCTCATCATCATCTGTTTTGATGCTGGCAATTATAAAAC TTCATCAAATGGTGCACCAAATCATGGTCTAATCCAGCACTCCAGGTCTATATTACTAATCCACGATCCGATCCAGAAGGCGAGAGGAGCTGTAAATGCA CCATTGAAGGCAGGATTGAAGTCTTCAAACCAGAATAGTGAACCATTGCCTCGATGCATCCTGTTGGACATTGAAGGGACTACTACGCCTATAACATTCG TTACTGACGTCCTATTTCCTTATGCACGTGACAATGTTGCAAAGCATTTGTCAGCAACATACGAGACCGAAAATACTCAAGACGACATAAAGCTGTTGCG CTCTCAGGTTGAAGATGACCTGGCACAAGGTGTTAACGGTGCTATCCCCATCCCACCAGATGATGCTGGAAAGGATGCAGTGATTGCAGCACTGGTTGCT AATGTCGAGGCAATGATAAAAGCAGACCGCAAGATCACTGCTTTAAAACAATTACAAGGGCACGTATGGAGAACTGGGTTTCAAAACAATGAGTTGGAAG GAGTAGTTTACGATGATGTACCTGAAGCATTGAAGAGCTGGCATGCTTTAGGAATCAAGGTGTATATATACTCGAGTGGTAGCAGGTTGGCACAAAGGCT GATCTTTGGGAACACAAATGCGGGAGATTTGAGGCGATTTTTGTCTGGTTTTTTCGACACTAACGTTGGGACCAAAAGGGAATCCAGCAGCTACATCCAG ATTTCTGAGTCACTAGGAGTGGATAGTCCATCTGAGATTTTGTTCTTGACTGATGTTGTACAAGAAGCAGTTGCTGCAAAAGCAGCAGGTTTGAAGGTGC TGATCTCTGTTCGGCCGGGGAACTCTCCATTGCCGGAGAATCATGGCTTCAAGACCATCAACTCTTTTCTGGAAGTATGA
AA sequence Show only first row Show all	>Lus10041928 pacid=23153511 polypeptide=Lus10041928 locus=Lus10041928.g ID=Lus10041928.BGIv1.0 annot-version=v1.0 METAAVKVGVNVASLFAYFPEPYPYKPPKNSVCSPLFPKFIYSSIQPGRIFRLNLIIICFDAGNYKTSSNGAPNHGLIQHSRSILLIHDPIQKARGAVNA PLKAGLKSSNQNSEPLPRCILLDIEGTTTPITFVTDVLFPYARDNVAKHLSATYETENTQDDIKLLRSQVEDDLAQGVNGAIPIPPDDAGKDAVIAALVA NVEAMIKADRKITALKQLQGHVWRTGFQNNELEGVVYDDVPEALKSWHALGIKVYIYSSGSRLAQRLIFGNTNAGDLRRFLSGFFDTNVGTKRESSSYIQ ISESLGVDSPSEILFLTDVVQEAVAAKAAGLKVLISVRPGNSPLPENHGFKTINSFLEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	0	1
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	2.2	0.9630
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	5.5	0.9586
AT2G33180			unknown protein		Lus10023686 [exp]	6.0	0.9531
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	6.8	0.9592
AT5G53490			Tetratricopeptide repeat (TPR)...		Lus10007788 [exp]	7.3	0.9523
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	8.4	0.9469
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	8.9	0.9501
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	9.5	0.9493
AT2G26340			unknown protein		Lus10000477 [exp]	10.0	0.9536
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	10.6	0.9529

Compare expression of checked genes

Lus10041928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.