Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28280 105 / 2e-27 VQ motif-containing protein (.1.2) AT3G15300 97 / 2e-24 VQ motif-containing protein (.1) AT5G53830 95 / 3e-23 VQ motif-containing protein (.1) AT2G33780 69 / 5e-14 VQ motif-containing protein (.1) AT5G08480 44 / 1e-05 VQ motif-containing protein (.1.2) AT1G80450 41 / 0.0003 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005543 [exp] 271 / 5e-92 AT5G53830 154 / 4e-46 VQ motif-containing protein (.1) Lus10015315 [exp] 89 / 8e-21 AT1G28280 203 / 3e-65 VQ motif-containing protein (.1.2) Lus10026247 [exp] 53 / 3e-08 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1) Lus10025443 [exp] 52 / 5e-08 AT1G28280 154 / 2e-47 VQ motif-containing protein (.1.2) Lus10042423 [exp] 51 / 2e-07 AT1G80450 83 / 6e-20 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118200 [exp] 130 / 6e-37 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.001G399100 [exp] 126 / 1e-35 AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2) Potri.011G053700 [exp] 101 / 2e-25 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.004G044800 [exp] 95 / 3e-23 AT1G28280 223 / 1e-72 VQ motif-containing protein (.1.2) Potri.004G134200 [exp] 43 / 5e-05 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2) Potri.006G266700 [exp] 42 / 0.0002 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10041929 pacid=23153746 polypeptide=Lus10041929 locus=Lus10041929.g ID=Lus10041929.BGIv1.0 annot-version=v1.0 ATGGAAGGCAGCAGTAGCAGTACAGCATTAGTCATGATGAATAATCCTTCATCATCATCATCCCAGCAGCAACCAAATCTAATCCAAATCCCTATATCTC AAATTCCAACTCATTACACTCACCACCACCACCATTTGAATCCTTCCCCAACAACCTTCGTCCAAGCCCACACTTCCACTTTCAAGCAAGTCGTCCAGAT GCTCACCGGCTCCCCCGACACCGCCAAGCACGCCTCCCAAGATCCTCCGAGGACCAACAACACCAATTTCCCGATTCCTCCAATCAGAAACAAGAAAGTA CAGAACAGCCACCAGCAGCAGAGTTTCAAGCTGTACGAAAGGAGAAACAGCAGCTTCAAACACTGCAGCCTCATGATCAACCCTGCCGCCGCCGTCGGCG GCCGTGGTTTCGCTTTCAATTCGCCGTCGTCGTCGTCCCCTTCTTCCGCCGAGATTCTGTCTCCTAGCTTGCTTGATTTCCCCAAGCTCACTCTTCTTAG CCCTGTTACTCCTCTGAACCAGGAAGCCTTCCGCAACAACGGCAATCAAAACTCCGGCAATTCGTCGGCGGGGAACTGTAGCAGCTCATCGGCGGAGGAG GAAGAGAGGGCGATTGCAGAGAAAGGGTTTTATTTGCATCCTTCCCCGTTGTCAACTCCGAGAGAATCTGAGCCTCAGCTACTTCCCCTGTTTCCTTTGA CATCTCCCCGAGAAGCAAAATCACCACCGCCGGCGACCTGA
AA sequence Show only first row Show all	>Lus10041929 pacid=23153746 polypeptide=Lus10041929 locus=Lus10041929.g ID=Lus10041929.BGIv1.0 annot-version=v1.0 MEGSSSSTALVMMNNPSSSSSQQQPNLIQIPISQIPTHYTHHHHHLNPSPTTFVQAHTSTFKQVVQMLTGSPDTAKHASQDPPRTNNTNFPIPPIRNKKV QNSHQQQSFKLYERRNSSFKHCSLMINPAAAVGGRGFAFNSPSSSSPSSAEILSPSLLDFPKLTLLSPVTPLNQEAFRNNGNQNSGNSSAGNCSSSSAEE EERAIAEKGFYLHPSPLSTPRESEPQLLPLFPLTSPREAKSPPPAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	0	1
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	1.4	0.9527
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	2.0	0.9450
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	3.0	0.9117
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	3.2	0.9259
					Lus10022598 [exp]	3.5	0.9230
AT4G14580		CIPK4, SnRK3.3	SNF1-RELATED PROTEIN KINASE 3....		Lus10041173 [exp]	4.9	0.8957
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	5.2	0.9313
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	5.3	0.9172
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	6.0	0.9263
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10013042 [exp]	6.2	0.9038

Compare expression of checked genes

Lus10041929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.