Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53130 145 / 4e-45 GRI GRIM REAPER, Stigma-specific Stig1 family protein (.1) AT5G55110 87 / 5e-22 Stigma-specific Stig1 family protein (.1) AT4G26880 78 / 7e-19 Stigma-specific Stig1 family protein (.1) AT1G50720 72 / 1e-16 Stigma-specific Stig1 family protein (.1) AT1G50650 71 / 1e-15 Stigma-specific Stig1 family protein (.1) AT1G11925 62 / 9e-13 Stigma-specific Stig1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005544 [exp] 204 / 5e-69 AT1G53130 125 / 6e-38 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10011146 [exp] 75 / 2e-17 AT1G50720 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Lus10043047 [exp] 75 / 2e-17 AT1G50720 133 / 3e-40 Stigma-specific Stig1 family protein (.1) Lus10011117 [exp] 71 / 7e-16 AT1G50720 117 / 6e-34 Stigma-specific Stig1 family protein (.1) Lus10006512 [exp] 68 / 6e-15 AT1G50650 71 / 5e-16 Stigma-specific Stig1 family protein (.1) Lus10000696 [exp] 65 / 4e-13 AT1G50650 100 / 3e-26 Stigma-specific Stig1 family protein (.1) Lus10020831 [exp] 55 / 9e-10 AT1G11925 100 / 7e-28 Stigma-specific Stig1 family protein (.1) Lus10012679 [exp] 54 / 2e-09 AT1G11925 104 / 3e-29 Stigma-specific Stig1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399200 [exp] 139 / 5e-43 AT1G53130 149 / 2e-46 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Potri.011G118600 [exp] 139 / 1e-42 AT1G53130 136 / 1e-41 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Potri.004G006900 [exp] 74 / 2e-17 AT1G11925 108 / 4e-31 Stigma-specific Stig1 family protein (.1) Potri.004G007100 [exp] 74 / 3e-17 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1) Potri.011G008932 [exp] 73 / 9e-17 AT1G11925 91 / 4e-24 Stigma-specific Stig1 family protein (.1) Potri.001G355700 [exp] 72 / 2e-16 AT1G50650 119 / 9e-35 Stigma-specific Stig1 family protein (.1) Potri.011G008804 [exp] 69 / 2e-15 AT1G11925 98 / 8e-27 Stigma-specific Stig1 family protein (.1) Potri.011G009000 [exp] 69 / 2e-15 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1) Potri.011G009100 [exp] 68 / 5e-15 AT1G11925 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Potri.011G080800 [exp] 67 / 1e-14 AT1G50720 130 / 3e-39 Stigma-specific Stig1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04885 [flax] [poplar] Stig1 Stigma-specific protein, Stig1
Representative CDS sequence Show only first row Show all	>Lus10041930 pacid=23153737 polypeptide=Lus10041930 locus=Lus10041930.g ID=Lus10041930.BGIv1.0 annot-version=v1.0 ATGGCACCCAACACCAACCTCAGACTCACCATAATCACACTAACAGCCGCCATTCTCCTGATCCTCCAACCAATCTCCTCATCCGCCGCCACATTATTCG AAGACGATGACGAGTACTACGTCCTCGACAACCCCCCGAAGTCATCATCACGGCCGGGGATGAGCCTGTTCCTCAAGGACAAGATCAGGAAAGGCATGAA GTGCTACCCCGGAGGAAGCAACATCTGCGACGGAGTTTCGGCTAACAACGGGACAGCAATGCTCTACTGCTGCAAGAACAACTGCAGGAATGTGATCCAG GACGTCAACAACTGTGGGTCGTGCGGGACCCGGTGCGGGTTCGGGCTACGATGCTGCAATGGTGCCTGCATCAGCGTGGCTTACGATCCTAACCACTGTG GGGAGTGTAACCAGAAGTGCTCGCCTGGGCAGAAGTGCGAGTATGGTTCGTGCGGCTACGCTTGA
AA sequence Show only first row Show all	>Lus10041930 pacid=23153737 polypeptide=Lus10041930 locus=Lus10041930.g ID=Lus10041930.BGIv1.0 annot-version=v1.0 MAPNTNLRLTIITLTAAILLILQPISSSAATLFEDDDEYYVLDNPPKSSSRPGMSLFLKDKIRKGMKCYPGGSNICDGVSANNGTAMLYCCKNNCRNVIQ DVNNCGSCGTRCGFGLRCCNGACISVAYDPNHCGECNQKCSPGQKCEYGSCGYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10041930 [exp]	0	1
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Lus10035136 [exp]	1.4	0.9078
AT5G60520			Late embryogenesis abundant (L...		Lus10015148 [exp]	15.1	0.8965
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	18.3	0.9014
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	21.3	0.9011
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10011318 [exp]	27.9	0.8913
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	28.2	0.8350
AT5G57500			Galactosyltransferase family p...		Lus10006963 [exp]	32.6	0.8822
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	34.1	0.8884
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	35.4	0.8899
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	39.2	0.8876

Compare expression of checked genes

Lus10041930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.