Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53120 378 / 8e-132 RNA-binding S4 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005545 [exp] 626 / 0 AT1G53120 396 / 6e-139 RNA-binding S4 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119800 [exp] 402 / 3e-141 AT1G53120 424 / 3e-150 RNA-binding S4 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Lus10041931 pacid=23153642 polypeptide=Lus10041931 locus=Lus10041931.g ID=Lus10041931.BGIv1.0 annot-version=v1.0 ATGGCTACCGCCATGCTCCAGGCCGCTGCCCCGTGGCTTCTGCGGAGGACAATCCAAAGTTTCGCAGTCTCTCAGCATATTCCAACAGTTTCTAAGCTCC CCTTCCATGGAACCCTCCGCTTTCTTCCGGTCCGTCCTCCTAAGGGACACCAACATGTATCAGGCATTTGTAGCTCTGCACAAGCTGTAAAGAAGCAAGT TGATGGGCTACTGAACAGTGTTACAGACAAAAATGTCATTGAAGATGTGAAGTATGTTATTGAAATGGCTACCAGGGCAGGACGGGATCGTAAAATTCTC TGCACAGATTTTCTTACTCCACCAATATTGAAAGAATCAAGGGTTGTGTTGGAAAAACTTGCCGACATTAGAACAGATGTCCAAGGAGGATATCCTGAGG CTGAGCGCTGCCGAATCTCAATTGCGCATCATGAAGTACTGGCACATGAACCAGATGTTGTTGCAGCAATGACTATATCAGGAAACTTTGGATTCGTATC CTGTTCTCATGGTGACTTCTTAGGCTCAATTCTTGGTACAGGAGTTTCCAGGGAAAAGGTTGGAGATGTATTACTCTTGCAAGGAGGTAAAGGGGCACAA TTTCTAGTGGTTCCAGAACTTGTCGACTTTTTTATAAGCTCTTTGGATAAGGTTGGAAATGTTCCAGTTTCTTGTGCGAGGATACCGCTGCCTGATATTG AATACCAATCACCAAGCACCAAGACATTTAGAACAGTAGAAGCATCACTCAGGTTAGATGCTTTGGCCAGCGCAGGATTCAAGCTCTCAAGATCCAAACT TGTCAATTTGATCAGCAAAGGGGAAGTACGAGTGAACTGGAGCACGGTAACCAAGAACAATACTAGCTTGAAGAGTGGAGATATGGTCTCAGTCAGCGGG AAAGGAAGACTAAAGATAGGAGAAATAAACAGCACAAAGAAAGGGAAGTTTGGAGTGGAGCTCATTCGATACCTGTAA
AA sequence Show only first row Show all	>Lus10041931 pacid=23153642 polypeptide=Lus10041931 locus=Lus10041931.g ID=Lus10041931.BGIv1.0 annot-version=v1.0 MATAMLQAAAPWLLRRTIQSFAVSQHIPTVSKLPFHGTLRFLPVRPPKGHQHVSGICSSAQAVKKQVDGLLNSVTDKNVIEDVKYVIEMATRAGRDRKIL CTDFLTPPILKESRVVLEKLADIRTDVQGGYPEAERCRISIAHHEVLAHEPDVVAAMTISGNFGFVSCSHGDFLGSILGTGVSREKVGDVLLLQGGKGAQ FLVVPELVDFFISSLDKVGNVPVSCARIPLPDIEYQSPSTKTFRTVEASLRLDALASAGFKLSRSKLVNLISKGEVRVNWSTVTKNNTSLKSGDMVSVSG KGRLKIGEINSTKKGKFGVELIRYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53120			RNA-binding S4 domain-containi...		Lus10041931 [exp]	0	1
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10011775 [exp]	1.7	0.8577
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	4.5	0.8535
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	6.2	0.7929
AT3G12540			Protein of unknown function, D...		Lus10023409 [exp]	6.6	0.7685
AT2G26680			unknown protein		Lus10030089 [exp]	7.1	0.7641
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	7.5	0.8050
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	11.9	0.8363
AT5G07740			actin binding (.1)		Lus10015725 [exp]	17.0	0.7942
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	17.2	0.8104
AT4G01995			unknown protein		Lus10012004 [exp]	19.0	0.7934

Compare expression of checked genes

Lus10041931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.