Plant FIBer expression Database

Lus10041932 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27500 389 / 1e-127 PPI1 proton pump interactor 1 (.1)
AT3G15340 189 / 3e-52 PPI2 proton pump interactor 2 (.1.2)
AT5G36690 164 / 2e-43 unknown protein
AT5G36780 164 / 2e-43 unknown protein
AT1G20970 110 / 6e-25 unknown protein
AT1G53110 104 / 8e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005546
[exp]
909 / 0 AT4G27500 415 / 2e-137 proton pump interactor 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G119700
[exp]
502 / 8e-172 AT4G27500 431 / 6e-144 proton pump interactor 1 (.1)
Potri.001G399400
[exp]
480 / 3e-163 AT4G27500 463 / 2e-156 proton pump interactor 1 (.1)
Potri.006G191500
[exp]
113 / 1e-25 AT1G20970 309 / 6e-86 unknown protein
Potri.013G130500
[exp]
62 / 4e-10 AT1G10880 67 / 2e-12 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info
Representative CDS sequence
>Lus10041932 pacid=23153769 polypeptide=Lus10041932 locus=Lus10041932.g ID=Lus10041932.BGIv1.0 annot-version=v1.0
ATGGGCGTTGAGGTGGTATCATCTGATGTGGCGCACGTGACTGTTGAGGCTGTTAATGAAGTTGATAATTCGGTTCTGCATGAGAAGGAGAACGGTAAGC
TGGAGAAAGAATCAGGTCCGAACGAGGCTATCAAATTTGGTTCTCATGAAAGTGAGTTAGAGAACGGGGATAGGAATGATGTTGTGGATCCCAAGTTGCC
TCAGAATGCTCTTGAAGAGTGGCCTGCAGAACCCAAGCAGGTCCATTCTTTCTATTTTATCAAGTGGTGGTCATATGATGATCCCAAAATTAAGGCCAAA
ATCGATCTGGTCGATAAGGAGATTACTAAGAGGAATGAGGCTTTGACGCGTGTTAATGATCGAACGAGAGCGAAAAGGGATGAGAGAGCAGAGCTGATTG
CAGAGCTGAGGCCATTGAAAACTCAAGGTTATGAGCTCAGAAACGTCATAGGTGAGAAGAGAAAAGAAATGCAACCCTTGCAACAGGCATTAGGGAAGAT
GCGAAATAATAACGGTGCTGGTCGTGGTGCGATATGTTCATCAGAGGAAGAGCTTAATGAGCTTATATACAGCATGCAGTACCACATTCAACATGAAAGC
ATCCCGTTATCTCAAGAGAAACAAATACTGAGAGAAATGAAGCTGCTAGAGGGGACTAGAGAAAAAGTTATTGCCAATGCTGCAATGATAGCCAATATTC
AGGATTCGTTAGGTCAGAAAGAATCAATTCAAGATCAAGTCAAACATATGAATGTCGATATGGATTCAGTGAGGAAGGAGCATGATCTAATCTGGTCAAA
AATTGACAAACTGAAAGCAAAAATTGAGGCTTTAGACAAAGAAATTGAATCTATAGATGTGGAACGACAAGCTATTAAACTGAAGAGGGATGAAGCTTTT
GATAGTCTCAGACAAATAAGAGAACAGCGTGATGAAGGGAATTCTCAATTTTATGTTAGCCGTAAAGTCGTGAGCCATGCAAGACAGCTTTCCGTTAGTA
AGGATGTGCAGGCTATACAGCAACTTTGTCATGAAGAGGGAGAGAAATTTATGTCGGTCTGGAACAATGACAAGGCCTTCAGGAATGATTATGAGAAACG
ACTGTTGTCATCACTCGACAAGAGAATATTGAGTCGCGATGGACGAATCAGGAACCCTGGTGAGAAGCCATTAGTGGTGCATGAGGCACCGTTACCTTCG
GAGCCGTTACCAGTGGCAAAGGCTGAAGCACCCGCCAAAAACGTCCAGAAAGTGACCGAGAAGAAAACTGCGAAGACTGCTCCTGAGAAAATTGAGGAAG
TTGAGGAAGAGGTGGCGGGATTAGAAATAGCACCGAAAGCCACCCCTGCTGCTGCTCCGGTCGACGAAGCAAAGCTGAAGGAACTGAAAAGAGAGGAGGA
AATAGCGAAAGCTAAGCTGGCCATGGAAAGGAAGAAGAAGTTGGCTGAGAAAGCAGCTGCAAAAGCAGCGAAAAGAGCCGAAAAGGAAGCTGAAAAGAAG
CTCAAGGAAATTACTTCGTCTTTTGCTGATTTCATTGAGCGCGAAAAGAAACAGAAGAAAAAGGCTGGAGCATCGGCACCAACGAACGAGGATGAGAAAG
AAACTGAGGAAGTTGTCGAGGCAGCAGAACTGGAAACTGAAGAAACAAAGGAGGCAGCAGCACCTGTAGCTGCTAAACAAAAGGCCAAGAGGGAGAATCC
CGTTCGATACAGGAACCGTGTCAGGGTCCTTGAAGCTCCTCCCAGGGCTCTTCTGAAGAAGAAGAAGTCGATGAACTACTTGCTGTGGGCTGTTCCTGCT
GGCATCGTAGCTGTTCTCCTGGTTGTGCTTGCGTACCTGTATCTCCTTTGA
AA sequence
>Lus10041932 pacid=23153769 polypeptide=Lus10041932 locus=Lus10041932.g ID=Lus10041932.BGIv1.0 annot-version=v1.0
MGVEVVSSDVAHVTVEAVNEVDNSVLHEKENGKLEKESGPNEAIKFGSHESELENGDRNDVVDPKLPQNALEEWPAEPKQVHSFYFIKWWSYDDPKIKAK
IDLVDKEITKRNEALTRVNDRTRAKRDERAELIAELRPLKTQGYELRNVIGEKRKEMQPLQQALGKMRNNNGAGRGAICSSEEELNELIYSMQYHIQHES
IPLSQEKQILREMKLLEGTREKVIANAAMIANIQDSLGQKESIQDQVKHMNVDMDSVRKEHDLIWSKIDKLKAKIEALDKEIESIDVERQAIKLKRDEAF
DSLRQIREQRDEGNSQFYVSRKVVSHARQLSVSKDVQAIQQLCHEEGEKFMSVWNNDKAFRNDYEKRLLSSLDKRILSRDGRIRNPGEKPLVVHEAPLPS
EPLPVAKAEAPAKNVQKVTEKKTAKTAPEKIEEVEEEVAGLEIAPKATPAAAPVDEAKLKELKREEEIAKAKLAMERKKKLAEKAAAKAAKRAEKEAEKK
LKEITSSFADFIEREKKQKKKAGASAPTNEDEKETEEVVEAAELETEETKEAAAPVAAKQKAKRENPVRYRNRVRVLEAPPRALLKKKKSMNYLLWAVPA
GIVAVLLVVLAYLYLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G27500 PPI1 proton pump interactor 1 (.1) Lus10041932
[exp]
0 1
AT5G54830 DOMON domain-containing protei... Lus10034323
[exp]
7.3 0.8323
AT5G19420 Regulator of chromosome conden... Lus10002751
[exp]
9.5 0.7647
AT5G63840 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN... Lus10033490
[exp]
12.7 0.8262
AT4G27500 PPI1 proton pump interactor 1 (.1) Lus10005546
[exp]
13.3 0.7218
AT3G58050 unknown protein Lus10016244
[exp]
14.3 0.8255
AT3G58050 unknown protein Lus10017239
[exp]
14.8 0.8132
AT3G14940 ATPPC3 phosphoenolpyruvate carboxylas... Lus10000065
[exp]
17.1 0.8037
AT1G04430 S-adenosyl-L-methionine-depend... Lus10011815
[exp]
18.3 0.8135
AT1G07670 ATECA4 endomembrane-type CA-ATPase 4 ... Lus10038484
[exp]
20.8 0.7988
AT5G54830 DOMON domain-containing protei... Lus10041448
[exp]
25.3 0.7988

Lus10041932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.