Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61930 300 / 6e-99 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 278 / 5e-90 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G57930 254 / 2e-80 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 149 / 1e-41 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005547 [exp] 715 / 0 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041934 [exp] 283 / 4e-96 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 289 / 6e-95 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 300 / 3e-94 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10038736 [exp] 270 / 6e-87 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 259 / 1e-82 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 257 / 3e-81 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039659 [exp] 173 / 1e-50 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10027182 [exp] 92 / 6e-21 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106200 [exp] 313 / 1e-103 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 269 / 1e-86 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 265 / 9e-85 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.006G183900 [exp] 260 / 7e-83 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 148 / 4e-41 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10041933 pacid=23153965 polypeptide=Lus10041933 locus=Lus10041933.g ID=Lus10041933.BGIv1.0 annot-version=v1.0 ATGAGGCCAAATTTTGGAACGATACCGTACAGTTCAAGGATATTTTTTAGGAGTAATTTTTGGCGGACTTTGACTGTATACTCTGCAGTCTCGACAACTT GTACCGAGCTTCCCAGGAAACTTAAGAAATCTGAAAGGAAGCCTTGGGTCACGAGTGTGAATGAGCTCAAACGGAAGGCTATGCTGGAGAGGAAAGAGAA ACAGTCAGCGCACGAGAAAATCTTGCGGCCGCCTGAGAACGGGCTACTGGTCAAGGAATTGATCCCTGTTGCTCATGAAGTTTATGCTGCCAGAGCTGAA TTATTGCGTTGTGTCTCGAATGTTGCCAGGAGCATTGCTCTGTACTCATGCAGTGTTTGTGGAGAAGTTCATGTTGGTCATCCTCCACACAAGATCAGGA CTTGCGATGGGATTGGCAGCCTGAAAAACAAAGAGCATATATGGATGAAGGGAGGTGTTGAACACATTTTCCCTCAAGTCGAATCTTTCCATCTTTATGA CAGACTGGGAAGAGCAGTTTCTCATAATGAGCAGCTCCTAGTAGACCGGATTCCGGCAGTTGTGGAACTGTGTATACAATGTGGCGTTGACATACCAGTC TATCCAACAAGAAGAAGAGCCTTCCCTGCTTATAGTGTTGCTGGTAGAATTATTGATTTTGAGCGCAGATTCCCCAAAGAAGAAGAGCCACCAGGAAAAG ACATTAATACTAGTGGATTTTGGGAGAAGAGAAGTAATCCAATCCAGGGAATCGAATCTTCACACACGAGTCTTAACGATATACAAGAGTGTGCTATCCG AGGAATGAAATCATGGGAGGTAATGAGATTAGGGATCCAGAAACTCATGAGCAAGTACGCCATTCATACGTGTGGATATTGCCCCGAGGTTCAAGTGGGT AGAAATGGTCACAGAGTTAGAAACTGCCAAGCTTACAAGCATCAAATGAGAGATGGTCAACACGGATGGCAGGAGGCTACTGTTGATGACTTGGTTCCTC CAGTCTATGTATGGCATGTTCGTGATCTCAGTAGTCAGGAAGCCATGGTCCATGAACTGCAAAGGTATTATGGGATGTTGCCCGCAGTGGTGGAACTTTT TGCTCAGGCTGGTGCGCAGGTGGGCGGTGATTACACTCGCTTGATGAGGGGAGATATTGCAGTGCCTGAATTGGATGAATCTAATTGA
AA sequence Show only first row Show all	>Lus10041933 pacid=23153965 polypeptide=Lus10041933 locus=Lus10041933.g ID=Lus10041933.BGIv1.0 annot-version=v1.0 MRPNFGTIPYSSRIFFRSNFWRTLTVYSAVSTTCTELPRKLKKSERKPWVTSVNELKRKAMLERKEKQSAHEKILRPPENGLLVKELIPVAHEVYAARAE LLRCVSNVARSIALYSCSVCGEVHVGHPPHKIRTCDGIGSLKNKEHIWMKGGVEHIFPQVESFHLYDRLGRAVSHNEQLLVDRIPAVVELCIQCGVDIPV YPTRRRAFPAYSVAGRIIDFERRFPKEEEPPGKDINTSGFWEKRSNPIQGIESSHTSLNDIQECAIRGMKSWEVMRLGIQKLMSKYAIHTCGYCPEVQVG RNGHRVRNCQAYKHQMRDGQHGWQEATVDDLVPPVYVWHVRDLSSQEAMVHELQRYYGMLPAVVELFAQAGAQVGGDYTRLMRGDIAVPELDESN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041933 [exp]	0	1
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	11.2	0.8483
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	16.4	0.8159
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	20.5	0.8534
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012070 [exp]	24.9	0.8250
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	25.1	0.8119
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	27.3	0.8259
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	29.9	0.8389
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	31.9	0.7725
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10016248 [exp]	40.8	0.8186
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	46.8	0.8145

Compare expression of checked genes

Lus10041933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.