Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61930 162 / 3e-49 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G57930 145 / 3e-42 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 137 / 2e-39 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 87 / 7e-21 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041933 [exp] 284 / 9e-97 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10005547 [exp] 258 / 1e-86 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 148 / 5e-42 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10004105 [exp] 142 / 2e-41 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 142 / 8e-41 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 136 / 7e-39 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 135 / 7e-39 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039659 [exp] 103 / 2e-27 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10027182 [exp] 94 / 1e-23 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106200 [exp] 156 / 7e-47 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.006G183900 [exp] 149 / 1e-43 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 144 / 5e-42 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 139 / 3e-40 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 93 / 3e-23 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10041934 pacid=23153906 polypeptide=Lus10041934 locus=Lus10041934.g ID=Lus10041934.BGIv1.0 annot-version=v1.0 ATGATGATTGGAGCATATGAAAAAGAGTGTGCTATCCGAGGAATGAAATCATGGGAGGTAATGAGATTAGGGATCCAGAAACTCATGAGCAAGTACGCCA TTCATACGTGTGGATATTGCCCCGAGGTTCAAGTGGGTAGAAATGGTCACAGAGTTAGAAACTGCCAAGCTTACAAGCATCAAATGAGAGATGGTCAACA CGGATGGCAGGAGGCTACTGTTGATGACTTGGTTCCTCCAGTCTATGTATGGCATGTTCGTGATCTCAGTAGTCAGGAAGCCATGGTCCATGAACTGCAA AGGTATTATGGGATGTTGCCCGCAGTGGTGGAACTTTTTGCTCAGGCTGGTGCGCAGGTGGGCGGTGATTACACTCGCTTGATGAGGGGAGATATTGCAG TGCCTGAATTGGATGAATCTAATTTAGCAGTTTGA
AA sequence Show only first row Show all	>Lus10041934 pacid=23153906 polypeptide=Lus10041934 locus=Lus10041934.g ID=Lus10041934.BGIv1.0 annot-version=v1.0 MMIGAYEKECAIRGMKSWEVMRLGIQKLMSKYAIHTCGYCPEVQVGRNGHRVRNCQAYKHQMRDGQHGWQEATVDDLVPPVYVWHVRDLSSQEAMVHELQ RYYGMLPAVVELFAQAGAQVGGDYTRLMRGDIAVPELDESNLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	0	1
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	4.4	0.9102
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	8.9	0.8950
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	13.4	0.8916
AT1G33970			P-loop containing nucleoside t...		Lus10005299 [exp]	14.5	0.8910
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	15.5	0.8932
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	18.7	0.9037
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10020375 [exp]	18.8	0.8693
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	19.5	0.8705
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Lus10011372 [exp]	20.1	0.8606
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10032635 [exp]	23.0	0.8725

Compare expression of checked genes

Lus10041934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.