Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33810 89 / 1e-22 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 85 / 1e-20 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT3G60030 84 / 9e-19 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT3G15270 77 / 3e-17 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G69170 79 / 7e-17 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G47070 74 / 4e-15 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G02065 72 / 7e-15 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G27370 72 / 1e-14 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G27360 71 / 3e-14 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT5G43270 70 / 8e-14 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005548 [exp] 197 / 6e-64 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1) Lus10018610 [exp] 81 / 2e-18 AT3G15270 127 / 7e-37 squamosa promoter binding protein-like 5 (.1) Lus10039846 [exp] 76 / 6e-17 AT1G53160 129 / 8e-38 squamosa promoter binding protein-like 4 (.1.2) Lus10010071 [exp] 76 / 8e-16 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 76 / 1e-15 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10021034 [exp] 74 / 3e-15 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10015421 [exp] 70 / 4e-15 AT2G33810 128 / 4e-39 squamosa promoter binding protein-like 3 (.1) Lus10016275 [exp] 73 / 5e-15 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10013999 [exp] 70 / 5e-15 AT2G33810 128 / 6e-39 squamosa promoter binding protein-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G398200 [exp] 96 / 1e-24 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.011G116800 [exp] 92 / 9e-23 AT3G15270 159 / 5e-49 squamosa promoter binding protein-like 5 (.1) Potri.007G138800 [exp] 83 / 2e-19 AT3G15270 140 / 4e-42 squamosa promoter binding protein-like 5 (.1) Potri.004G046700 [exp] 80 / 1e-18 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.011G055900 [exp] 77 / 8e-18 AT2G33810 129 / 2e-39 squamosa promoter binding protein-like 3 (.1) Potri.014G057800 [exp] 80 / 2e-17 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.003G172600 [exp] 76 / 7e-16 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.016G048500 [exp] 75 / 1e-15 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.002G142400 [exp] 75 / 1e-15 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.001G055900 [exp] 75 / 2e-15 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10041935 pacid=23153938 polypeptide=Lus10041935 locus=Lus10041935.g ID=Lus10041935.BGIv1.0 annot-version=v1.0 ATGGATTTCCGCACGGACTCAGCTGGGTACACCAACGATCATCAGGTGGTGGATGATGATGAAGTGGAAGATCAGCAGCAGCTGCAGGAACTTGATATCA GCTGGAAGAAAGGAGCTGCTGGTCCGCCGAGAAGAGCATCTAACTTGTGTTGCCAGGTAGAGAGGTGCGGGGCCAATTTAAGCGAAGGGAAGCAGTACCA CCGTCGCCATAAGGTGTGCGACTTCCACTCCAAATGCCCTTCCGTCCTTGTCTCCGGTCTCCGCCAGAGGTTTTGTCAGCAATGCAGCAGGTGTCGGAGT TCGATGAAGCGAAGAGGAGCTGCCGGAGGCGGGGGGGGGGGGACAACGAAAGGCGGGGGGAGAGGTCGACAACGGTGGGGGGTGTCGGAGTTCGATGAAG CGAAGAGGAGCTGCCGGAGGCGGTTGGCTGGGCACAACGAAAGGCGGAGGAAGAGCTCGACAACGATGGCGGAAGGTATCAACTGTGGAGAAGGATCATC AAACCGTAAAGGAGTAGGAGGAGGAGGCATGTCAGTTCAGATGCAGCAGCATCAATGCACTAATAACAGCAGGCAATGCGATAATAATAATAATGGAGGA ATGAGGTTTCAGCAGGTTGCGGCGACTGGAAATATCAACTACAAGCGATCTCAAATCAGATATTAA
AA sequence Show only first row Show all	>Lus10041935 pacid=23153938 polypeptide=Lus10041935 locus=Lus10041935.g ID=Lus10041935.BGIv1.0 annot-version=v1.0 MDFRTDSAGYTNDHQVVDDDEVEDQQQLQELDISWKKGAAGPPRRASNLCCQVERCGANLSEGKQYHRRHKVCDFHSKCPSVLVSGLRQRFCQQCSRCRS SMKRRGAAGGGGGGTTKGGGRGRQRWGVSEFDEAKRSCRRRLAGHNERRRKSSTTMAEGINCGEGSSNRKGVGGGGMSVQMQQHQCTNNSRQCDNNNNGG MRFQQVAATGNINYKRSQIRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10041935 [exp]	0	1
AT5G24230			Lipase class 3-related protein...		Lus10018097 [exp]	1.4	0.9073
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10020001 [exp]	2.4	0.8884
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	4.9	0.8128
					Lus10026426 [exp]	18.7	0.7792
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	19.9	0.8066
AT3G57120			Protein kinase superfamily pro...		Lus10011518 [exp]	28.0	0.7798
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	28.1	0.7875
AT5G62350			Plant invertase/pectin methyle...		Lus10031713 [exp]	29.9	0.7274
					Lus10017801 [exp]	33.6	0.7605
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	35.0	0.8011

Compare expression of checked genes

Lus10041935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.