Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53900 384 / 6e-132 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 363 / 6e-124 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 121 / 8e-31 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT2G31280 83 / 8e-17 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT1G06150 81 / 5e-16 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G27230 65 / 4e-11 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 51 / 9e-07 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT5G24352 42 / 4e-05 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005549 [exp] 711 / 0 AT5G53900 410 / 7e-142 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10012986 [exp] 124 / 1e-31 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10024800 [exp] 120 / 8e-31 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10029179 [exp] 119 / 5e-30 AT1G60060 429 / 6e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10018736 [exp] 116 / 3e-29 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10033880 [exp] 66 / 2e-11 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033222 [exp] 58 / 8e-09 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10001527 [exp] 56 / 4e-08 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10013348 [exp] 54 / 2e-07 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397800 [exp] 456 / 6e-160 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.011G116400 [exp] 448 / 1e-156 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.014G024000 [exp] 133 / 5e-35 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.010G096400 [exp] 120 / 1e-30 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.005G222500 [exp] 84 / 4e-17 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 83 / 8e-17 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.006G090000 [exp] 61 / 6e-10 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G144900 [exp] 61 / 1e-09 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 59 / 3e-09 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 59 / 4e-09 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041936 pacid=23153617 polypeptide=Lus10041936 locus=Lus10041936.g ID=Lus10041936.BGIv1.0 annot-version=v1.0 ATGGTGGGCTCTGGAGATAGGAGAAGGAAAGAAGCGGTGGGGATGATGGCACTTCATGATGCACTCAGAGCCGTCTGTCTCAATTCAGACGACTGGTCTT ACTCTGTTTTCTGGACTATTCGTCCTCGCCCGAGGGTCAGAGGTGGTAATGGTTGCAAGGTTGGAGACGACAATGGAAGCTTGATGTTGATGTGGGAAGA TGGGTATTGCCGAGGAGGAGAAAATGGGTTCGACGATGGGGAGGATGATCCAGTCCGGAAAGCTTTCAGCAAAATGTCGATTCAGTTGTACAACTATGGA GAAGGGTTGATGGGGAAGGTGGCTTCAGATAAGTGTCATAAATGGGTGTTCAAGGAGCCATCATCTGAATCTGAACAGAATATCTCCAACTACTGGCAGA GCTCTTTTGATGCTATTCCCACTGAGTGGACTGATCAATTTGAGTCTGGCATTCAGACCATTGCTGTGATTCAAGCTGGACATGGCCTTCTCCAGCTGGG TTCCTGCAAGATTATACCAGAAGATCTGCATTTTGTGCTGAGAATGAGGCACACATTTGAGTCACTGGGGTACCAATCTGGCTTCTACCTATCCCAGCAG CTATTCTCATCCACCAGGAACAACAACAATTCATCCTCCTCCTCGACGTCGATCCTGCCTTCGAAGCATCCCGGCCTGATCCCACCACAGCTTTTCAACT ATGGTCAACAAAGGCCACTCTTTGCATCACCAAATTTCCAGAGCCCTGCAGGAGGAGGCAGAATGGCGGGGTTGTTCCCGCATCAGGCGAAAGAAGAGCC ACCGCATATGTTCCTTCACCCGAATTCTTCTGAAGGAGGGATGATCGGTGGAGGGCCGGAGCAAGAGAATGACATCAAGTGGCCAAATGGGATGTCTTTC TTCAGTGCTCTAACTGGCAGGACAGAAGATCATGCCAAGCTCTTGTTCAACCCTGAAGATAGCTTGGGGAACAAGGTAGTGGAGAACGCCAACTCCGATG CTGCTTCGGATATGCTTAATAGCAACAGCTTCCTGAGCTTGGACAGTGGTGGCAAAATGGATCAGGACAAGTACAAGAGGGGGTTCAGTAATGCTAGAAT GGGTGGTTCTTCATCTTCTTCTACTTCAGTTGATCATCATCATCAACAGCAGCAGCAAGCCATTGAGTATCGGAATTCAGAGCAACGGATGTACCCGGAT GTGATGGAGACCTACTTGGAATGA
AA sequence Show only first row Show all	>Lus10041936 pacid=23153617 polypeptide=Lus10041936 locus=Lus10041936.g ID=Lus10041936.BGIv1.0 annot-version=v1.0 MVGSGDRRRKEAVGMMALHDALRAVCLNSDDWSYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGYCRGGENGFDDGEDDPVRKAFSKMSIQLYNYG EGLMGKVASDKCHKWVFKEPSSESEQNISNYWQSSFDAIPTEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQQ LFSSTRNNNNSSSSSTSILPSKHPGLIPPQLFNYGQQRPLFASPNFQSPAGGGRMAGLFPHQAKEEPPHMFLHPNSSEGGMIGGGPEQENDIKWPNGMSF FSALTGRTEDHAKLLFNPEDSLGNKVVENANSDAASDMLNSNSFLSLDSGGKMDQDKYKRGFSNARMGGSSSSSTSVDHHHQQQQQAIEYRNSEQRMYPD VMETYLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	0	1
AT5G53900			Serine/threonine-protein kinas...		Lus10005549 [exp]	2.2	0.8470
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	5.5	0.7764
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10041243 [exp]	9.5	0.6750
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	11.0	0.7433
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	11.6	0.7526
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	17.5	0.6906
AT5G13340			unknown protein		Lus10035960 [exp]	28.4	0.7602
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	29.8	0.7642
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	34.3	0.7274
AT1G71430			unknown protein		Lus10007091 [exp]	38.5	0.7287

Compare expression of checked genes

Lus10041936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.