Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 1022 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 998 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 786 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 748 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 715 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 659 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29730 639 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 629 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 617 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 603 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 1479 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 1013 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 963 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 754 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 721 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031199 [exp] 611 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 585 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 535 / 1e-177 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 351 / 2e-112 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106400 [exp] 1130 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 1129 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 1113 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 1111 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385300 [exp] 1042 / 0 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 1041 / 0 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025800 [exp] 925 / 0 AT1G53440 1010 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385200 [exp] 848 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 847 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385900 [exp] 800 / 0 AT1G53440 889 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10041937 pacid=23153513 polypeptide=Lus10041937 locus=Lus10041937.g ID=Lus10041937.BGIv1.0 annot-version=v1.0 ATGGCTGACAAAATCCAAAGCAACGTTACCTGCGACTGCTCTTTCTCGAGTGGCACTGTTTGCCACGTCATCGCCATGAAGCTGAAAGGCTTTAACTTGA CAGGATCTCTACCACCTGAACTCGGCAACCTTACCCATTTGACTGAATTGGACCTAAACCGCAACTACATCAACGGAACCATCCCACGAAGTCTCGCGCA GCTTTCTAACCTCACTGTTTTGTCTCTTCTTGGAAACAGACTGAGTGGCCCTATCCCTTCTGAAATAGGCAACATTGCTAATCTGGAATCTCTGGTGTTG GAAAATAATCTGTTAACAGGACCTCTGCCTCCAAGCCTTGGAAACCTAAGAAGCTTGAGTAGACTCCTTCTTTCTGCAAACAACTTTACGGGTTCGATAC CAGATAGCTTCCGAAATTTAAGAAACCTTACTGACTTTAGGATAGATGGGAGCAGTTTGTCTGGACGGCTGCCCGAATTTATGGGGAACTGGACCAATCT TAAGCGACTGGATTTGCAAGGCACATCATTGCAGGGTCCTATTCCTTCTAGCATTTCAACGTTAAAGAATCTGACAGACTTGAGGATATCAGACTTGACT GGAACAAGTTCGGTTTTCCCGGACCTTAAGGAACTGATGAAGATGGAAGAACTAGCACTGCGAAACTGCTTGATGACTGGTTCAATCCCAGATTACATCG GAGAAATGACACAGTTGAAATCTTTGGATTTGAGCTTCAACAGTTTGTCAGGGCCTATACCAGCCACCCTGCAGAGTTTGGAGAGCCTGGATTTCACGTT TCTGAATAACAACTCATTAACCGGAGAAGTTCCAGATTGGATATTGAGCTCTAAATATAACTTTGACTTGTCTTACAACAACTTTACCGGGAAAGTTCAA CCTAGTTGTACCCAGACTGTTGTGAACCTGGTTTCTAGTTATTCATCAAGCTCGGTACCTTGGTGCTTGAAGAAGGACCTACCTTGCTCTAGGAATCCCC GGTTTCACGAGCTGTTTATCAATTGTGGAGGCCCCCGAGCTAATTTTGATGATGAAGAATATGAAGAAGACCTAACATTGGAGGGGCCAACAACTTTCTT CTCAGTACAGGAAAAATGGGCTTACAGTAGTACTGGAGTCTACTTGGGCGATGATGGAGCTGATTATGTGGCAAGAAACAGTTTCAGTCACAATGTTACC AGTATCTATCAGAATGCACGCCTAGCACCTCAATCGCTCAAACTTTTAGTAGCCTTGGAAGACGCATATTTGATATCTCAATTCAAGCGAGGAAGGGTAG TCCGACGGGACTTTGATATCATGGAAAGAGCTGGAGGAGTTGGTATTGGCATCACAGAGGTTTTTGATAATGTAACTGTGGATGGTAGTACTTTGGAGAT ACACTTGTATTGGTCTGGAAAAGGCACAACTGCTATTCCTGATAGAGGTGTTTATGGACCACTCATTTCCGCCATTAGTGTAACTCCAAACTTCCCTGTC GATGAAGGAGGTAGTGGTGGTTTATCAGGAGGAGCCATTGCTGGCATTGTCGTTTCTGCATTTGTAGTTGTTCTGTTCATTGGTGGAATCATCTACAAGA AAACAAGGAAGGAAGATGAAAATCAAGAACTACGAGGACTCGATCTCCAGACTGGCTTTTTCACCTTGAGACAGCTCAAACATGCTACTAATAACTTTGA TGCTACAAATAAGATTGGAGAAGGAGGATTCGGGCCTGTTTACAAGGGTATGCTTGCCGATGGCGGTGTAATTGCAGTGAAACAGCTATCCTCCAAATCA AAACAAGGAAACCGCGAATTCGTGAACGAAATAGGCATGATATCTGCATTGCAGCATCCGAATCTCGTCAAGCTTTATGGATGTTGCATTGAAGGAAATC AGCTCTTGCTCGTGTATGAGTACTTGGAAAACAACAGTCTGGCTCGTGCTCTATTCGGTCACCGGGAAGGAAAATTGGTGCTGGACTGGCAAACAAGGAG AAAAATACTGCTCGGGATTGCAAAGGGACTGTATTACCTCCACGAGGAGTCGAGGCTGAAAATCGTACACAGAGACATCAAAGCAACAAATGTCCTGCTT GATAAAGACCTCAATGCCAAGATTTCAGACTTCGGGTTGGCCAAGCTCGACGAAGAAGAGAACACACACATTAGCACCAGAATTGCTGGAACTATAGGAT ATATGGCTCCCGAGTACGCAATGAGAGGTTACTTGACAGACAAGGCAGACGTGTACAGCTTTGGAATCGTCATTCTCGAGACAGTTAGTGGAAAGAGCAA CACAAACTATAGGCCAAAAGAAGAGTTTATTTACCTTCTTGATGGGGCATATGTGCTGCAAGAGCAAGGAAACCTGATAGAGCTGGTGGATGAGGAGCTG GGATCAAAATTCTCAAAAGAAGAAGCAAGGAAGCTCCTCAACTTGGCCCTCCTATGCACCAACCCTTCACCAACTCTGCGCCCTCCAATGTCGGCGGTGG TGAAAATGATGGAAGGGAAAGCGCCGGTGCAAGCAGCTCCAATCATCAAGCGAGGAGGGAGCAACGCCAGCAGCCAAGATGCGAGGTTCAGGGCGTTTCA GACACTGTCACAGGACAGCCATACCAACATCACGACAGGTTCATGGGAAAGCAGAAGCGATCCGAATCAGAAGAGCATTTCGATGGATGCTCCTTCGTCG ACGTTCGACACATCTTCCGTGAAGAGCAAAGATGATTATGAACTTGATGATCTCTCCCAACCTTCCTCTTCTGCCAGGCTTCTATAG
AA sequence Show only first row Show all	>Lus10041937 pacid=23153513 polypeptide=Lus10041937 locus=Lus10041937.g ID=Lus10041937.BGIv1.0 annot-version=v1.0 MADKIQSNVTCDCSFSSGTVCHVIAMKLKGFNLTGSLPPELGNLTHLTELDLNRNYINGTIPRSLAQLSNLTVLSLLGNRLSGPIPSEIGNIANLESLVL ENNLLTGPLPPSLGNLRSLSRLLLSANNFTGSIPDSFRNLRNLTDFRIDGSSLSGRLPEFMGNWTNLKRLDLQGTSLQGPIPSSISTLKNLTDLRISDLT GTSSVFPDLKELMKMEELALRNCLMTGSIPDYIGEMTQLKSLDLSFNSLSGPIPATLQSLESLDFTFLNNNSLTGEVPDWILSSKYNFDLSYNNFTGKVQ PSCTQTVVNLVSSYSSSSVPWCLKKDLPCSRNPRFHELFINCGGPRANFDDEEYEEDLTLEGPTTFFSVQEKWAYSSTGVYLGDDGADYVARNSFSHNVT SIYQNARLAPQSLKLLVALEDAYLISQFKRGRVVRRDFDIMERAGGVGIGITEVFDNVTVDGSTLEIHLYWSGKGTTAIPDRGVYGPLISAISVTPNFPV DEGGSGGLSGGAIAGIVVSAFVVVLFIGGIIYKKTRKEDENQELRGLDLQTGFFTLRQLKHATNNFDATNKIGEGGFGPVYKGMLADGGVIAVKQLSSKS KQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGHREGKLVLDWQTRRKILLGIAKGLYYLHEESRLKIVHRDIKATNVLL DKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVILETVSGKSNTNYRPKEEFIYLLDGAYVLQEQGNLIELVDEEL GSKFSKEEARKLLNLALLCTNPSPTLRPPMSAVVKMMEGKAPVQAAPIIKRGGSNASSQDARFRAFQTLSQDSHTNITTGSWESRSDPNQKSISMDAPSS TFDTSSVKSKDDYELDDLSQPSSSARLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53440			Leucine-rich repeat transmembr...		Lus10041937 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	6.5	0.8464
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10006356 [exp]	8.7	0.8166
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	13.1	0.8479
AT2G47880			Glutaredoxin family protein (....		Lus10005937 [exp]	15.2	0.7704
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	17.0	0.8165
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031752 [exp]	19.4	0.7700
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	21.9	0.8140
AT1G54680			unknown protein		Lus10033821 [exp]	22.0	0.8164
AT1G65810			P-loop containing nucleoside t...		Lus10037353 [exp]	23.4	0.8071
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	29.8	0.7805

Compare expression of checked genes

Lus10041937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.