Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21900 259 / 3e-88 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 259 / 4e-88 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 236 / 5e-79 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 176 / 3e-55 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 157 / 5e-48 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 152 / 3e-46 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 145 / 3e-43 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 137 / 5e-40 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 118 / 8e-33 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 99 / 9e-26 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001615 [exp] 231 / 4e-77 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022972 [exp] 229 / 2e-76 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036786 [exp] 143 / 4e-42 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030436 [exp] 135 / 3e-39 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 134 / 6e-39 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 128 / 3e-37 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 119 / 2e-33 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 99 / 2e-25 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041182 [exp] 45 / 9e-06 AT3G22845 350 / 2e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085300 [exp] 274 / 6e-94 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 244 / 5e-82 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 237 / 2e-79 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 166 / 2e-51 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 157 / 4e-48 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 155 / 2e-47 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 155 / 3e-47 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 107 / 2e-29 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 44 / 2e-05 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10041939 pacid=23153839 polypeptide=Lus10041939 locus=Lus10041939.g ID=Lus10041939.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCGCTTGCGACAGGCGCAGCTCTGGCGGCGGCGTTGTTGCAGCTGTCGATGATCTTCGTATCACTCCCTGTTGCGAGAGGCATATGGCTGT CGATCCCTAGCACGGGAACCAAGTGTGTGTCCGAGGAGATTCATAACAATGTCGTCGTCTTGGCTGATTACTACGTTATCAACGAGGATAAGCCAGAGCA TGTTCCCAAGGTTTCCACCCGGGTTACATCCCCATACGGAAACAATCTATTCCACCAGGACAACGCAACTCACGGCCAGTTTGCCTTCACAACTAACGAA GCCGGTAACTACTTGGCATGTTTTTGGCTGGATGAACACCAACAAGATGTTACCAACATATCCTTGGGTCTGGAATGGAAGACAGGAATCACAGCAAAGG ACTGGGATTCAGTGGCAAAGAAAGAAAAGATCGAGGCAAGCTCCTCTTATAAGACTGATCTCCATTCTGGTGTTGAACTCGACCTCAAGAGGCTAGAGGC GTTGGTCGAATCAATCCATCAAAATCTACTCTATCTCAAAGAAAGGGAATCAGAAATGAGGGAAGTGAGTGAAAGAACAAACGGGAGAGTGGCTTGGTAC AGCATCATGGCACTTGGTGTGTGCATTGCAGTTTCAGGGTTTCAGTTATGGTACTTGACTCGTTACTTTCAGAAGAAGAAGCTTATCTAA
AA sequence Show only first row Show all	>Lus10041939 pacid=23153839 polypeptide=Lus10041939 locus=Lus10041939.g ID=Lus10041939.BGIv1.0 annot-version=v1.0 MAASLATGAALAAALLQLSMIFVSLPVARGIWLSIPSTGTKCVSEEIHNNVVVLADYYVINEDKPEHVPKVSTRVTSPYGNNLFHQDNATHGQFAFTTNE AGNYLACFWLDEHQQDVTNISLGLEWKTGITAKDWDSVAKKEKIEASSSYKTDLHSGVELDLKRLEALVESIHQNLLYLKERESEMREVSERTNGRVAWY SIMALGVCIAVSGFQLWYLTRYFQKKKLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21900			emp24/gp25L/p24 family/GOLD fa...		Lus10041939 [exp]	0	1
AT5G61310			Cytochrome c oxidase subunit V...		Lus10025028 [exp]	1.4	0.8791
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10022525 [exp]	2.4	0.8738
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	2.8	0.8523
AT5G61310			Cytochrome c oxidase subunit V...		Lus10002429 [exp]	4.5	0.8478
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10021742 [exp]	5.7	0.8311
AT5G67490			unknown protein		Lus10000389 [exp]	8.1	0.8135
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	10.4	0.7841
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	12.4	0.8094
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10030666 [exp]	13.5	0.8543
AT1G77350			unknown protein		Lus10018864 [exp]	14.4	0.7969

Compare expression of checked genes

Lus10041939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.