Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78630 313 / 2e-108 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1) AT3G01790 68 / 1e-13 Ribosomal protein L13 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005553 [exp] 387 / 1e-137 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1) Lus10032063 [exp] 67 / 7e-13 AT3G01790 308 / 3e-107 Ribosomal protein L13 family protein (.1.2) Lus10014597 [exp] 66 / 1e-12 AT3G01790 309 / 3e-108 Ribosomal protein L13 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106100 [exp] 318 / 2e-110 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.001G384600 [exp] 317 / 9e-110 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.001G334000 [exp] 71 / 8e-15 AT3G01790 299 / 2e-104 Ribosomal protein L13 family protein (.1.2) Potri.017G066000 [exp] 71 / 9e-15 AT3G01790 266 / 3e-91 Ribosomal protein L13 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [flax] [poplar] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Lus10041940 pacid=23153495 polypeptide=Lus10041940 locus=Lus10041940.g ID=Lus10041940.BGIv1.0 annot-version=v1.0 ATGGCGCTGCTTCACGGCTCATCCTCCATTGTTTTACCACCATCTTCTTCTACTTACCTCTCTTCATCGTCGTCGTCAAATCCCAGCAGCATTGTTAGTA CCAGCAGTCCTTTCGTGGTCGGATTCTCTGGCGCAAGTTTGCAGCTTTCTGCGCGGAAGTCTTGGGCTATTGGTTCCCAGAAGACAGGTTTCAAGCTCCC TCCTCCATTTCTCACCAAGAAGAAGGAGAAGAAGGAGAAAAAGGAAAAGCCCCCTCACATTCCTGTTGACCAACGCTGGATGGTTGAAGAATCTGAAGTC GGCGGTCCTGATATTTGGAACACGACGTGGTATCCTAAAGCTGCTGATCATGTAAACACTGAAAAGCCATGGTTCATTGTCGATGCAACTGACAAGATTT TGGGGAGATTGGCATCTACCATTGCTATTCATATCCGTGGCAAGAATTTGGGAACATTCACTCCCAGTGTGGACATGGGTGCTTTTGTGATTGTGAGAAA GTCGCTGTATAGAGTCTCTGTATCTGGGAAGAAGAGAACCCAAAAGTTATACAGGAGGCATTCTGGAAGACCAGGTGGGATGACAGTAGAGACCTTTGAC CAGTTGCAACAGAGGATTCCAGAAAGGATTATCGAACACGCGGTTCGTGGGATGCTTCCTAAAGGGAGGCTTGGGAGAGCACTCTTCAACCACCTGAAAG TTTACAAGGGACCAGACCATCCTCATGAGGCTCAAATGCCCAAGGAGTTGCCGATAAGGGACAAAAGAATACAAAAGCAGACTTAG
AA sequence Show only first row Show all	>Lus10041940 pacid=23153495 polypeptide=Lus10041940 locus=Lus10041940.g ID=Lus10041940.BGIv1.0 annot-version=v1.0 MALLHGSSSIVLPPSSSTYLSSSSSSNPSSIVSTSSPFVVGFSGASLQLSARKSWAIGSQKTGFKLPPPFLTKKKEKKEKKEKPPHIPVDQRWMVEESEV GGPDIWNTTWYPKAADHVNTEKPWFIVDATDKILGRLASTIAIHIRGKNLGTFTPSVDMGAFVIVRKSLYRVSVSGKKRTQKLYRRHSGRPGGMTVETFD QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQMPKELPIRDKRIQKQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	0	1
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	1.4	0.9855
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	2.0	0.9844
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	3.0	0.9834
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	3.5	0.9766
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	4.5	0.9731
AT5G14910			Heavy metal transport/detoxifi...		Lus10014520 [exp]	4.5	0.9783
AT1G48460			unknown protein		Lus10032738 [exp]	5.1	0.9641
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10010639 [exp]	6.0	0.9785
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	6.5	0.9755
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	6.6	0.9729

Compare expression of checked genes

Lus10041940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.