Plant FIBer expression Database

Lus10041942 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24700 45 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017951
[exp]
138 / 1e-42 AT4G24700 68 / 5e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G086300
[exp]
65 / 1e-13 AT4G24700 70 / 1e-15 unknown protein
Potri.015G084200
[exp]
64 / 1e-13 AT4G24700 88 / 6e-23 unknown protein
Potri.012G086000
[exp]
63 / 3e-13 AT4G24700 73 / 4e-17 unknown protein
Potri.004G085100
[exp]
46 / 9e-07 AT5G37550 80 / 2e-18 unknown protein
PFAM info
Representative CDS sequence
>Lus10041942 pacid=23153859 polypeptide=Lus10041942 locus=Lus10041942.g ID=Lus10041942.BGIv1.0 annot-version=v1.0
ATGAAGCAAAAGAAGGTAGCAGCTGATCCAGGTGACGACGAGAAATGCTCCGCCTCCGACCAGGATGTCGAGATTCTCAAGGCGGTAGCACAGGCATGGT
ACTCCCGCTCCGGTGGCAGCAACTCCAACCCCACAAGCGAGTACGATGCTCCCCGGCGGCGCAATTCCGCTCGGCCGTCGAGGTTCAGGATTGAGGCGGC
ATCATCCAACGCTAAAAATCAGGCATTGGGATCGTCAATTGCTAGCAGCGGGAGCTGGGATTTCAGGAAGTCGTTGCTGGATTCGTATGAGATTGTGACG
GTGTCTAAGAAGCTTGAAGAGCGGGGGATTTCGCTGGATGGTGATGATGACGTCAGTCGACGGCGGCTGAGAAGGGAGAGCGAGAATAGCCTTAGGAACT
TGCTGAATCGAATTTCTTCTTCCAAGAGATTCACTGTTTGA
AA sequence
>Lus10041942 pacid=23153859 polypeptide=Lus10041942 locus=Lus10041942.g ID=Lus10041942.BGIv1.0 annot-version=v1.0
MKQKKVAADPGDDEKCSASDQDVEILKAVAQAWYSRSGGSNSNPTSEYDAPRRRNSARPSRFRIEAASSNAKNQALGSSIASSGSWDFRKSLLDSYEIVT
VSKKLEERGISLDGDDDVSRRRLRRESENSLRNLLNRISSSKRFTV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24700 unknown protein Lus10041942
[exp]
0 1
AT1G32060 PRK phosphoribulokinase (.1) Lus10011060
[exp]
3.3 0.9492
AT1G32060 PRK phosphoribulokinase (.1) Lus10000674
[exp]
4.9 0.9487
AT3G01500 SABP3, ATBCA1, ... ARABIDOPSIS THALIANA SALICYLIC... Lus10022235
[exp]
5.0 0.9365
AT3G54050 HCEF1 high cyclic electron flow 1 (.... Lus10035545
[exp]
8.2 0.9367
AT3G63140 CSP41A chloroplast stem-loop binding ... Lus10006931
[exp]
8.7 0.9424
AT3G05410 Photosystem II reaction center... Lus10004498
[exp]
9.8 0.9336
AT4G26530 Aldolase superfamily protein (... Lus10032956
[exp]
10.8 0.9230
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Lus10007837
[exp]
12.5 0.9139
AT1G51100 unknown protein Lus10011316
[exp]
13.0 0.9228
AT3G54050 HCEF1 high cyclic electron flow 1 (.... Lus10027748
[exp]
14.1 0.9296

Lus10041942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.