Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017956 [exp] 53 / 6e-09 AT5G26990 74 / 8e-15 Drought-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086500 [exp] 48 / 2e-07 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10041945 pacid=23153772 polypeptide=Lus10041945 locus=Lus10041945.g ID=Lus10041945.BGIv1.0 annot-version=v1.0 ATGTTGACTTCTGGACTTCCAGAGTTGACTCGGCTAAGCACTTCTCCCATCTTCAATCCTCCAGGCATTATCACTCTGCGGAGAAGGATATCCTACAACA CAACAACAAATGGCAGAACGAACATTCCTGCAGAGCCTGTCACGGATCCACTCCTCCTGCCATTCATCAGCAGCGTTCCAGATTCAGACTCAAAGGCAAG CCAAGAGGATAATTCGCTGAAGGAAACTAGCCCCAAGACCAAAAGCAGCAGTTCGGAGGTGTCCCCTGATGATGAGGCGGACCGTGAAGAGAGGAGGCAG ATGGCGGATTTTGTTCAGGAGCTGGTCGCATCGACAGTCTTCAAAGATTGA
AA sequence Show only first row Show all	>Lus10041945 pacid=23153772 polypeptide=Lus10041945 locus=Lus10041945.g ID=Lus10041945.BGIv1.0 annot-version=v1.0 MLTSGLPELTRLSTSPIFNPPGIITLRRRISYNTTTNGRTNIPAEPVTDPLLLPFISSVPDSDSKASQEDNSLKETSPKTKSSSSEVSPDDEADREERRQ MADFVQELVASTVFKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56280		ATDI19	drought-induced 19 (.1.2)		Lus10041945 [exp]	0	1
AT1G17400			unknown protein		Lus10027660 [exp]	64.3	0.5851
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10036861 [exp]	108.3	0.5781

Compare expression of checked genes

Lus10041945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.