Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20360 709 / 0 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 477 / 3e-166 GTP binding Elongation factor Tu family protein (.1) AT5G60390 134 / 3e-34 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 134 / 3e-34 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 134 / 3e-34 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 134 / 3e-34 GTP binding Elongation factor Tu family protein (.1) AT1G18070 116 / 1e-27 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 112 / 3e-26 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G31060 72 / 3e-13 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G04170 64 / 1e-10 EIF2 GAMMA, EIF2GAMMA eukaryotic translation initiation factor 2 gamma subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017957 [exp] 808 / 0 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10043342 [exp] 726 / 0 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 643 / 0 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10027995 [exp] 472 / 1e-163 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10008161 [exp] 469 / 1e-161 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10019918 [exp] 136 / 4e-35 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 134 / 2e-34 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 134 / 2e-34 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 129 / 8e-33 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110200 [exp] 713 / 0 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.003G121600 [exp] 708 / 0 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.002G215900 [exp] 479 / 3e-167 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 477 / 4e-166 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.008G042500 [exp] 138 / 1e-35 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G130900 [exp] 138 / 1e-35 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 137 / 1e-35 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 137 / 1e-35 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 137 / 2e-35 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 137 / 2e-35 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10041946 pacid=23153804 polypeptide=Lus10041946 locus=Lus10041946.g ID=Lus10041946.BGIv1.0 annot-version=v1.0 ATGGCAATCTCCGCCCCCAACACCGCCGTCTCTTCCTCAAGGCTCGCCGCCGTCTCCTCCTCCTCCTCCTCCGCTGCCTTCACCACTTTCAATTTCTCCT CTCAACCAACCACCAAATCTCGCCTCCTCTCTTCCCCATTCGTATCCCCTTGCCTCACCGTCACTTCCACCTCCGCCGTCCTCCGCCGCCGTCGCTGTGG AGACTCCTCGTTCACAGTCAGAGCCGCAAGAGGGAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACAATCGGCCACGTTGACCACGGCAAGACC ACATTAACCGCCGCCCTAACCATGGCCCTCGCTGCCATGGGCAACAGCGCCCCCAAGAAGTACGACGAAATCGACGCCGCCCCAGAAGAACGCGCCCGCG GAATCACAATCAACACCGCCACCGTGGAGTACGAGACTGAGAGCCGCCACTACGCCCACGTGGACTGCCCGGGACACGCCGATTACGTCAAGAACATGAT CACCGGCGCCGCACAGATGGACGGAGCCATCCTCGTAGTCTCCGGCGCCGACGGCCCCATGCCCCAGACCAAAGAGCACATCTTGCTCGCCAAGCAGGTC GGAGTCCCCAACATGGTGGTGTTCATGAACAAACAGGACCAGGTAGACGACGAGGAGCTTCTTCAATTGGTCGAATTGGAGGTTCGTGAACTCTTAACCT CTTACGAATTCCCCGGCGATGATATTCCGATCATATCCGGTTCAGCTCTTTTAGCTTTGGAAGCACTGATGGCCAACCCAGCAATCAAAAGAGGTGAAAA CGAATGGGTAGATAAGATCTATCAGCTTATGGATTCCGTCGACAGTTACATTCCGATTCCACAACGGCAGGTAGATTTGCCGTTCTTGCTCGCCGTTGAA GATGTGTTCTCGATCACCGGTCGTGGAACTGTCGCCACCGGAAGAGTTGAGAGGGGGAAAATTAGAGTTGGTGAGACTCTAGCATTGGTAGGGTTAAGAG AAACCAGAGAAACTATTGTTACAGGTGTGGAAATGTTCCAGAAGATTCTTGACGAAAAGATTCTTGGCGAAGCAATGGCGGGTGATAATGTGGGGCTTTT GCTTAGAGGTATGCAGAAGGCTGATATCCAGAGAGGGATGGTGTTAGCTAAGCCCGGGACAATCACTCCCCATACGAAATTTGAGGCGGTTGTTTACGTG CTGAAGAAGGAAGAAGGCGGTAGGCATTCGCCGTTTTTCGCAGGGTACAAGCCGCAGTTCTACATGAGGACTACTGATGTTACAGGGAAAGTTACGTCGA TTATGAACGATAAGGACGAGGAGTCAAAGATGGTTATGCCCGGGGATCGAGTTAAGATGATCGTGGAGCTCATTATGCCTGTGGCTTGTGAATCTGGAAT GCGGTTCGCCATCAGAGAAGGTGGGAAGACTGTTGGAGCTGGCGTCATCGGCAAAATCCTCGAGTAA
AA sequence Show only first row Show all	>Lus10041946 pacid=23153804 polypeptide=Lus10041946 locus=Lus10041946.g ID=Lus10041946.BGIv1.0 annot-version=v1.0 MAISAPNTAVSSSRLAAVSSSSSSAAFTTFNFSSQPTTKSRLLSSPFVSPCLTVTSTSAVLRRRRCGDSSFTVRAARGKFERKKPHVNIGTIGHVDHGKT TLTAALTMALAAMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV GVPNMVVFMNKQDQVDDEELLQLVELEVRELLTSYEFPGDDIPIISGSALLALEALMANPAIKRGENEWVDKIYQLMDSVDSYIPIPQRQVDLPFLLAVE DVFSITGRGTVATGRVERGKIRVGETLALVGLRETRETIVTGVEMFQKILDEKILGEAMAGDNVGLLLRGMQKADIQRGMVLAKPGTITPHTKFEAVVYV LKKEEGGRHSPFFAGYKPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMIVELIMPVACESGMRFAIREGGKTVGAGVIGKILE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	0	1
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	1.0	0.9532
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10016971 [exp]	2.0	0.9439
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	2.8	0.9274
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	3.9	0.9380
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	4.9	0.9056
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10032688 [exp]	4.9	0.9205
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	5.9	0.9235
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	6.2	0.9043
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10021297 [exp]	6.3	0.9005
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	6.5	0.8994

Compare expression of checked genes

Lus10041946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.