Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48260 584 / 0 WNK3 with no lysine (K) kinase 3 (.1) AT3G04910 514 / 1e-175 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G22420 486 / 1e-166 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT5G28080 482 / 3e-166 WNK9 Protein kinase superfamily protein (.1.2) AT3G18750 479 / 1e-163 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 471 / 1e-160 WNK7 Protein kinase superfamily protein (.1.2) AT3G51630 453 / 5e-154 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 439 / 4e-148 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT5G41990 431 / 6e-145 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 422 / 5e-142 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017957 [exp] 889 / 0 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10020236 [exp] 521 / 1e-178 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 520 / 4e-178 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10010547 [exp] 501 / 4e-171 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 501 / 4e-171 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10017318 [exp] 469 / 1e-159 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 471 / 1e-158 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10033225 [exp] 462 / 5e-157 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10003215 [exp] 462 / 3e-154 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086700 [exp] 726 / 0 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 706 / 0 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G036300 [exp] 519 / 2e-177 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 516 / 5e-176 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 514 / 3e-175 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 507 / 1e-172 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.016G134600 [exp] 474 / 3e-161 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.003G145300 [exp] 466 / 2e-158 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.001G085500 [exp] 465 / 4e-158 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G057300 [exp] 464 / 1e-156 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041947 pacid=23154037 polypeptide=Lus10041947 locus=Lus10041947.g ID=Lus10041947.BGIv1.0 annot-version=v1.0 ATGTCACAGGACTCGTCCTCTGAGCAAGACCCTGAAGATTCCGACTCTGATTTCGTTGAGAAAGATCCCACCGGTCGCTACGGTCGGTATAAAGAGATTC TGGGAAAAGGTGCTTTCAAGAAAGTATACAGAGCATTTGATGAATTTGAAGGTATAGAAGTAGCTTGGAATCAGGTGAAAGTTGCAGATCTGCTGCGTAA TTCTGTGGATTTGGAACGATTGTATTCGGAGGTTCATCTGCTAAAGACGTTGAAGCATAAGAACATCATCAAATTCTACAATTCGTGGGTCGATACCAAA AGTGAGCACATCAACTTCATCACTGAAATCTTCACTTCTGGAACTTTGCGCCAGTACCGCAAGAAGCACAAACATGTGGATTTAAGAGCATTGAAGAAAT GGTCGCGACAGATTCTTGAAGGGCTTCTGTACCTTCATAGCCATGACCCACCTGTCATTCATAGAGATTTGAAATGTGACAACATCTTTGTTAATGGGAA CCAAGGTGAAGTGAAGATTGGGGATTTGGGTTTGGCTGCCATTCTTCAACAGGCTCGGGCTGCTCATAGCGTCATCGGTACGCCCGAGTTCATGGCGCCC GAGCTTTACGAGGAGGAATACAATGAGCTTGTTGACATCTATGCATTTGGGATGTGCTTGTTGGAGTTAGTCACATTTGAGTACCCATACGTCGAGTGTT CCAATGCTGCTCAGATATATAAGAAAGTTACACTGGGTGTAAAACCAGCATCATTGGTAAAGGTAAAGGATGAAAATGTGAAAGCATTTATTGAGAAGTG TATAGCAACAGTTTGTGATCGATTATCCGCAAGGGAACTCTTAATGGATCCTTTTCTTAGATCCGATGGAGAAAGTGAATCCATAGCTCGTGCTTTACCA TCAGGTGTCAAAAGTTCAGATTCTGATCATAAGAATTTCTTAAGAATTGGCGGGGATAATTCAAATAATCATAGCAGAGATTTCATTGTCCAAGGTCAAC GAAAAGACGTGAATACAATTTTCTTGAAACTACGAATTGCAGATTCTACAGGTCACTTTCGAAATATCCACTTCCCTTTTGACATTGAAGTCGACACTGC AATTGCCGTTGCTAGTGAAATGGTGGAAGAGTTGGACTTGACTGATCAAGATGTTTCAATGATTGCTGCAATGATTGATACAGAAATTCGATCCCACATT CCAAAGTGGGCATCCGAGAAAACTGATCCAGTTGAAGAGACTACTGATCCGGAGATTACCGATACTGAAAGTAAGGACGTTGAGAACAGAGATGATGGTT CTCCATTCTCTAGCGAATCAACTTGTTCAAGCATTCTAGCGTTGGAAAGATTGCCGTCGGGGAGGAAATACTGGTCCGACTCTCCTAGGACATTTGGCAT AAGCTCTCCGAAAAGGCCCGAATCATCTCATTTGATGGATCATGAAGCTTGTACGACAAGTAACCACGAGCACGGCGATCATCATACTGACGCGGATTCG GATGATGATAATGGAAGCAAAGCAAAAGATAAGGTTTGTGAGACAAGTTCAATTAAGTTAGATGTGAAGGAAGTGGCTGAAAAACTTAAGTATTTGTTAA TGAAGCAGCAAGAAGAACTAGATGAACTAAAGAAAAAACATGAACTGGCCATATTAGATTTTTTGAGTGAGTCTTCTCCTGAAATCCATAGTGAGGTATT AAGTATTTGTACCCTAGAAGTACCTAAATCAAGAATTCACAGGAGCAATGTCACATGA
AA sequence Show only first row Show all	>Lus10041947 pacid=23154037 polypeptide=Lus10041947 locus=Lus10041947.g ID=Lus10041947.BGIv1.0 annot-version=v1.0 MSQDSSSEQDPEDSDSDFVEKDPTGRYGRYKEILGKGAFKKVYRAFDEFEGIEVAWNQVKVADLLRNSVDLERLYSEVHLLKTLKHKNIIKFYNSWVDTK SEHINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARAAHSVIGTPEFMAP ELYEEEYNELVDIYAFGMCLLELVTFEYPYVECSNAAQIYKKVTLGVKPASLVKVKDENVKAFIEKCIATVCDRLSARELLMDPFLRSDGESESIARALP SGVKSSDSDHKNFLRIGGDNSNNHSRDFIVQGQRKDVNTIFLKLRIADSTGHFRNIHFPFDIEVDTAIAVASEMVEELDLTDQDVSMIAAMIDTEIRSHI PKWASEKTDPVEETTDPEITDTESKDVENRDDGSPFSSESTCSSILALERLPSGRKYWSDSPRTFGISSPKRPESSHLMDHEACTTSNHEHGDHHTDADS DDDNGSKAKDKVCETSSIKLDVKEVAEKLKYLLMKQQEELDELKKKHELAILDFLSESSPEIHSEVLSICTLEVPKSRIHRSNVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	0	1
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	1.0	0.8765
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	2.4	0.8526
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	4.9	0.8153
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	6.7	0.8127
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034739 [exp]	9.2	0.7886
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10018115 [exp]	9.9	0.8311
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	10.2	0.8085
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	11.7	0.7829
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	12.0	0.8020
AT1G29530			unknown protein		Lus10011974 [exp]	13.2	0.7705

Compare expression of checked genes

Lus10041947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.